-
We have introduced `t-SNE` and `UMAP` as alternative ordination methods in qiime2-2021.11. Should we therefore change the input parameter name for the ordination (which previously always was a PCoA) f…
-
## Schedule
**Saturday 5th Jan 2018, 2 to 6 pm.**
## Participant audience
Students doing an MBA course, learning Business Intelligence tools like Tableau / PowerBI / SuperSet / other (will update…
-
Hi,
From looking at the code of generate_beta_ordination_single, it looks like you forgot to define 'meta_tab' in the function before calling it.
sdoms updated
8 months ago
-
Hi everyone,
I have a problem when using plot_ordination to create a DPCoA. The color argument works just fine, but when I try to use the shape argument with one of my sample data categories I rece…
-
Hi,
I am trying to label the points with my OTUnumber, right now it can only do with "Phylum" or "Class" etc.
```
> p3 = plot_ordination(PS1, PS.ord, type="biplot", color="Domain", shape="locat…
-
I know this isn't an MRE, but should be clear enough. I have this code:
```
temp_ps = f_and_b_ps
# temp_ps = all_ps
temp_metadata = temp_ps@sam_data
temp_metadata = temp_metadata[,c(
'Sample…
-
Hi there!
First off -- THANK YOU for your work on this package. It's something I've been looking for for nearly a year and provides a leaps-and-bounds improvement in terms of understandability rel…
-
Hello,
I was searching for this option but with no luck. It would be great if we could delete redundant data matrices, ordinations and similarities that were created while searching for the best fit…
-
Hi!
I have a couple of issues/questions, for which I can't seem to be able to find an answer browsing through everything.
1) I am using plot_ordination to generate an NMDS plot on my data, I wou…
-
```
Could you offer an option in view clusters, to colour the clusters in
ordination space. This rendering is often used for GDM model results.
So from a dissimilarity matrix for the currently sele…