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From salem:
Dockerfile:
_"
FROM smalikic/dreamchallenge_base_image
RUN git clone https://smalikic@bitbucket.org/smalikic/docker_ctpsingle_pcawg.git
RUN cp -rf docker_ctpsingle_pcawg/* /opt/CTPs…
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Niall mentioned it would be useful if the Worker automatically logged the name/id of the container when it launches a new workflow.
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Some values in the INI file could be parameters passed to the INIGenerator.
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It could happen that if this bag is executed against an existing VM image which _already has_ `sensu-server ` in /etc/hosts, a new entry for sensu-server will be _appended_ to /etc/hosts, and then the…
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Hi,
I would like to run this workflow using changin the /datastore and /workflow folders to /nvme/datastore and /nvme/workflow on my host.
This is the change I did on the workflow.ini file:
`common_d…
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Hi, I am trying to apply this to the Pancancer dataset (Sequencing-based gene expression) from the ICGC portal but the result was no good. The data points entangle with each other from donors with dif…
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Rather: Instructions at the end of the readme in this repo are a bit confusing. Don't need to generate the json.ini here, the workflow will do it for you if you provide the template.ini used in the do…
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This needs to be moved to download from /tmp to a permanent location
(also take a look for all downloads that go to /tmp like what we did with container-host-bag)
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## Feature Request
### Desired behaviour
Implement a way for users to change the name of a workflow or tool in a similar way to display names for Organizations/collections described by #2119. This…
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@lindaxiang, there are some branches running out of the develop for some time now. Please consider merging them back to develop to avoid maintenance challenges. Some branches are quite stable already,…