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Currently, `PatchWSIDataset` generates patches based on pre-defined locations. In digital pathology use cases, there is a need for generating such patches randomly from all over the whole slide image.…
drbeh updated
2 years ago
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Hi,
first of all, thanks for publishing the RadImageNet dataset!
While working with it, I discovered that there are quite some duplicate entries, when checking the MD5 hash of the files.
1. Diff…
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Currently OpenJPH supports full image frame decoding. This works great for standard image sizes but does not work for very large size images (e.g. > 10,000 width x 10,000 height) as is found in Digi…
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How do I extend the image input/output to anything greater than 320x320 which is currently used in the multi class segmentation tutorial in this package?
When I simply changed the input size to 512 t…
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FastPathology consistently crashed after multi-image inference. All the output files are saved, but it crashes right after this with no visible error print:
```
WARNING [48032] Test data was NOT f…
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**Is your feature request related to a problem? Please describe.**
We need to look at Next-generation file formats (NGFF) (https://ngff.openmicroscopy.org/latest/) which use [Zarr](https://zarr.rea…
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In MONAI Pathology WG, we have discussed about the need for being able to read whole slide images at specific resolution (mpp or magnification) in addition to reading at a specific level. The feature …
drbeh updated
8 months ago
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## 🧰 Task
Title says it all!
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https://arxiv.org/abs/1707.02485
> The inability to interpret the model prediction in semantically and visually meaningful ways is a well-known shortcoming of most existing computer-aided diagnosis…
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I installed the hooknet-tls with `docker build -t hooknet-tls .`
Then I want to test whether it can work successfully. I downloaded the TCGA-18-5592-01Z-00-DX1.tif in https://drive.google.com/file/…