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### Description of feature
The `predictions/peptide_predictions.tsv` file looks like this right now:
```
peptide_id start end peptide_type peptide_class prediction_tool nlpprecursor…
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@sureshhewabi is working on the first Mascot submission with some data from the Mascot team. An issue was found while parsing the MGF, already an issue in pyteomics has been created https://github.com…
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Hi all,
I'm currently processing an LFQ-DiaNN output using the iq package. My code below works fine except that the peptide_extractor worked once but then stopped working the next day. Any ideas wh…
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We want some filtering capabilities for peptide characteristics.
From Rui:
- Peptides identified in DIA data
- Filter out those peptides that contain Cysteine
- Filter out those peptides that co…
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Objectives of the tool:
- Create a subdirectory to store the essential information (files) needed for review
- Create a Tiered and Annotated report table that makes it more clear which fusion cand…
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Hello,
While running mhcflurry, I get this error (shown in the last few lines)
2022-08-11 01:32:37,063 - isovar.effect_prediction:112 - INFO - Keeping 0 effects with predictable AA sequences for V…
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Dear all,
The proposal has been made to obsolete GO:0097304 lipoprotein biosynthetic process via signal peptide cleavage
see https://github.com/geneontology/go-ontology/issues/28575.
The reason …
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In our discussion with @mrgunner, she indicated she would like to continue to explore the (His)_n peptides.
Can you take a look at the files in [this directory](https://github.com/choderalab/mcce-cha…
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We need to port the peptide builder tool from Avo1 for inserting simple peptide strands.
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Hello,
I was wondering if I can use AutoDock-Vina for docking between proteins and peptides.If not, do you have other suggestions?
Best Regards
Soodabeh