PRIDE-Archive xi-mzidentml-converter issues

PRIDE-Archive / xi-mzidentml-converter

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Issues for the web from discussion 25/06/2024

#70 ypriverol opened 1 week ago
1
update pipfile?

#69 colin-combe closed 2 months ago
0
traceback in logging; fix scores

#68 colin-combe closed 2 months ago
0
fixes for MS2 files

#67 colin-combe closed 2 months ago
0
fix create_db_schema; fix tests; reduce memory use

#66 colin-combe closed 2 months ago
0
fix - SearchModifications and Enzymes are optional

#65 colin-combe closed 3 months ago
0
fix for elements that should be optional

#64 colin-combe closed 3 months ago
0
Datasets from SIM-XL, Mascot and ProteomeDiscover in PRIDE

#63 ypriverol opened 3 months ago
20
Inconsistent residue pairs output

#62 aozalevsky opened 3 months ago
29
delete api from coverter / delete converter from api

#61 colin-combe closed 3 months ago
5
valid accession numbers but missing names and gene names?

#60 colin-combe opened 3 months ago
0
buttons that don't do anything at top of crosslinking page?

#59 colin-combe opened 3 months ago
0
Request a correction on URL

#58 sureshhewabi closed 3 months ago
3
Sync filename keys for the PDB-Dev endpoints

#57 aozalevsky closed 3 months ago
5
Few small Issues to check

#56 sureshhewabi closed 3 months ago
1
maintain the crosslining datasets within PRIDE archive

#55 sureshhewabi closed 3 months ago
1
Rate Limit

#54 sureshhewabi closed 4 months ago
3
FAST-API version?

#53 colin-combe closed 5 months ago
1
query visualisation failed error

#52 sureshhewabi closed 5 months ago
6
pagination issue (dataset page)?

#51 colin-combe closed 4 months ago
7
Pagination Issue

#50 sureshhewabi closed 4 months ago
2
xiview is not working

#49 ypriverol closed 5 months ago
13
Add the publication accession

#48 ypriverol closed 5 months ago
3
update crosslinking submission guidelines

#47 colin-combe closed 5 months ago
1
add prot accession to pdbDev endpoints

#46 colin-combe closed 5 months ago
2
Check Loading time

#45 sureshhewabi closed 5 months ago
3
PDB-Dev endpoint timing out

#44 colin-combe closed 3 months ago
33
Perform the first submission in PDB and PRIDE Archive

#43 ypriverol opened 6 months ago
0
For every protein in PDBDev we should aim to have the list of datasets in crosslinking resource.

#42 ypriverol closed 5 months ago
1
Work with the iPRG group to do complete submision for the study in 2023

#41 ypriverol closed 5 months ago
0
Contact other software providers MaxQuant, Mascot OpenMS to perform submissions for the 3DProteomics

#40 ypriverol closed 5 months ago
2
A dataset page should be created for every project

#39 ypriverol closed 5 months ago
0
The accessions in the dataset table should be links to the original dataset in PRIDE Archive.

#38 ypriverol closed 5 months ago
2
Protein search in the protein details table

#37 ypriverol closed 5 months ago
1
In the dataset table fix the title truncated

#36 ypriverol closed 5 months ago
1
Parse the rest of the large datasets from PRIDE Infrastructure

#35 ypriverol closed 4 months ago
1
add accession numbers to PDB-Dev endpoint output

#34 colin-combe closed 5 months ago
4
Crosslinking + 3Dproteomics 1.2: Tasks and Issues.

#33 sureshhewabi closed 5 months ago
1
minor change to PDB-Dev endpoint URL

#32 colin-combe closed 6 months ago
0
missing await keywords?

#31 colin-combe closed 7 months ago
0
include Edinburgh Uni in credits

#30 colin-combe closed 5 months ago
1
Overall Statistics panel

#29 colin-combe closed 5 months ago
5
some renaming of API endpoints

#28 colin-combe closed 6 months ago
1
number of crosslinked peptides is always the same as the number of peptides? Check this.

#27 colin-combe closed 6 months ago
2
'Protein details' table doesn't update

#26 colin-combe closed 7 months ago
3
process_dataset.py stacktrace

#25 colin-combe closed 7 months ago
0
Issues with Gene Names fetch from Uniprot

#24 sureshhewabi closed 5 months ago
2
capitalisation of API title; small change to url for pdbdev endpoint

#23 colin-combe closed 7 months ago
0
improve health endpoint

#22 sureshhewabi closed 5 months ago
1
URL Change in API

#21 sureshhewabi closed 5 months ago
1