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Hello,
I am trying to get familiar with SCENIC+ workflow using 10x multiome pbmc tutorial. However, pycistarget couldn't generate menr.pkl file for SCENIC+ input. All I get are a few lists of html…
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The build plans have displayIds like: `Anderson_Promoters_in_vector_BBa_J23100_pOpen_v4`
This has two problems:
1. It's likely to be too long for Twist (who have a 32-character limit)
2. It's not v…
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Greate script, but I have an issue:
I'm stuck on scrapping my own city over and over again. I guess RA detect my IP and that's why it behave like this.
I've tried several things:
- modifying the sc…
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Scaffold
SPCC16C4.18c taf6 SAGA complex/transcription factor TFIID complex histone H4-like subunit Taf6
SPAC15A10.02 taf12 SAGA complex/transcription factor TFIID complex subunit A Taf12
SPBC21H7…
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Intergenic mutations may affect protein expression (e.g. mutations in RBS or promoters), but there isn't information available for upstream/downstream genes. I though that snpEFF let us do this in the…
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It would be interesting to write articles on our blog about this guys:
Promoters ([Questions](http://wiki.rcn.io/interview/promoters/questions.html))
- [ ] Red kite (Steve Rosefield)
- [ ] CCCX (Keit…
Me4ta updated
8 years ago
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My log file:
[ArchR-createArrows-2a3c284c353742-Date-2024-04-15_Time-01-37-40.623548.log](https://github.com/GreenleafLab/ArchR/files/14999684/ArchR-createArrows-2a3c284c353742-Date-2024-04-15_Time-0…
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My first thought here is to just have a scatterplot with log10 pvalue for upregulation on the x axis, and log10 pvalue for downregulation on the y axis.
| p p p
l |
…
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I was able to get download_dataset to work as expected on my macbook pro but when I try to use it on my university's CHPC system I get this error.
Do you have any idea what could be causing this?…
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Hi,
In the "promoters_seq_example.bed" file, what is the 4th and 5th column?
I assume 1st-3rd column is "chr", "start", "end" and the 6th is "strand"
I was trying to use my own bed file with on…