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I am currently utilizing the Protein_ligand.ipynb.
However, I have encountered a notification from Colab indicating that the GPU is not being utilized during the runtime. Additionally, I am observing…
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Hi everyone,
I'm very new to the BEAST community and tumbled across an issue.
Using IQtree's ModelFinder, I identified the best protein substitution models for a set of proteins I included in a phyl…
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The `protein-translation` exercise adds extra codons without mentioning them in the instructions. This makes it confusing for students. I would personally be in favor of dropping the additional codons…
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This jupyter notebook is empty - was there a different file uploaded?
https://github.com/asapdiscovery/asapdiscovery/blob/main/examples/protein_and_ligand_prep.ipynb
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`cazy_webscraper` is not identifying the NCBI protein version accessions correctly, and is unable to pair up the downloaded data with data in the local CAZyme database.
```bash
Traceback (most rec…
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### Question
Hi, I am loading a JNLPBA dataset from the Flair library, and I would like to keep only the protein mentions, renaming them as "Gene." Additionally, I want to remove all other labels d…
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Hi, I want to build a protein-ligand system where the ligand has more than 150 atoms.
Here is my script:
```
def read protein(protein_file):
protein = pdbfile.PDBFile(protein_file)
retu…
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**What is this request referring to?**
non-protein-coding variant
**What is the name you would like SO to give the term?**
non_protein_coding_variant
**What is the definition that you would li…
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https://github.com/bert0n0sez/py/blob/dccb190cce7644f70fe9f7acf98f5400c7662857/6/seq2protein.py#L4-L11
Такая ссылка будет работать, только на локалке
1/1
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### Prefix
ncbiprotein
### Explanation
I was digging/cleaning into DrugBank data. They have things like this
```
GenBank Protein Database
33150626
```
I had to try/guess th…