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I am trying to run your example (biomedgpt_inference.ipynb) and the OpenBioMed/ckpts/protein_ckpts/esm2-3b/config.json file is not found. Actually, there are no json files in the ckpts folder. Are the…
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hi, this is a wonderful work!
I'm wondering if I can fix part of the peptide. For example, I want the generated peptides to be SDRXXXXDDG, and I want the model to help me design the X residue. If not…
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Hi this is JeongSoo Na
After installation in README file, I try this command
But this error is printed
```
(dynamicbind) PS C:\Users\jsna\Desktop\Github\DynamicBind> python .\run_single_pr…
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Hi,
I followed the readme to install the DiffDock-L as follows:
conda env create --file environment.yml
conda activate diffdock
However, when I tried running the "interface" python I faced the…
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Hi,
thank you for your great work !
I've successfully installed RFAA and run an example with 4DFR and MTX ligand.
But with Protein/Nucleic acid complex, i've this error message:
[...]
Running HHb…
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Hello :
We employed DIA-NN 1.8.1 to obtain results for the same data on different platforms (Windows / Ubuntu), and all processes were completed without any errors. Nevertheless, we discovered some…
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I executed the following command with an added "-p" option.
python run_single_protein_inference.py ./data/1qg8_cleaned.pdb ./data/1qg8_input.csv --savings_per_complex 40 --inference_steps 20 --header…
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Thank you for your work, but I had some trouble trying to install and use it.
At the end is my error message. I noticed that these two issues are very similar to my error message:
https://github…
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https://www.etched.com/announcing-etched
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Hi,
I observed while running the command [ time python -m inference --config default_inference_args.yaml --protein_ligand_csv data/test_1.csv --out_dir results_L_cpu/user_predictions_small] the GPU …