-
Hi, thank you for this approach, absolutely fascinating! I'm hoping to use this in a workflow to assess and triage eukaryotic genome annotations using FoldSeek. The range of protein sequences can be s…
-
1. Myosins (we’ll have antibodies and tagged myosins for students to use in the lab)
2. Forkhead transcription factors, including RFX. We are currently generating antibodies against RFX proteins, but…
-
This is on hold until #263 is complete.
Odorant binding proteins (OBPs) are thought to help odorants, most of which are oil-soluble, disperse into the aqueous mucus layer of the olfactory epitheliu…
-
The page https://activedriverdb.org/protein/browse/ has a little too much information and should be compressed. I actually wonder if this type of a view is even necessary given that we have top 100 di…
-
We have
https://www.pombase.org/term/MOD:00818
I wanted to check this using
https://services.healthtech.dtu.dk/services/NetGPI-1.1/
but I haven't been able to run the search to completion.
Pr…
-
In the text there it writes:
> For example, the codon TCA (or UGA if we describe it as an RNA sequence) codes for S, the amino acid Serine.
Should that be `UCA` for the RNA sequence?
(I wa…
-
I followed your method to generate secondary structure sequences for proteins in cafa3 and then performed one-hot encoding on them to create features. However, the prediction performance is not satisf…
-
I'm attempting to generate predictions for multimeric complexes, where one chain is a chimeric/fusion protein and has components from different organisms. About ~85% of this chain is from one organism…
-
Hello,
From the README, it is not clear how to supply a protein or a list thereof for training/inference. Could you clarify:
- how to supply inputs (proteins for --site, protein pairs for --search)
…
-
* **PTHR ID & PTN node:**
GO:0000030 | mannosyltransferase activity | IBA with S000000557 , PTN002003922 | contributes_to | GO_REF:0000033
* **Sequences with problematic annotation (ID + gene/pr…