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Dear Nesvilab,
I am doing LFQ analysis for 96 samples. It did all the searches which took so long and then I received this error. Could you please help me what is the issue?
Exception in threa…
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Hi,
I am running some tests on linux with a large database built from multiple metagenomes. It crashes at the filtering step with:
```
...
time="02:21:03" level=error msg="Cannot decode packed b…
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I have used --version to test the installation of tools in the container. For some tools it works and for most it does'nt. The full test bash script to test a tool installatiion is:
```
conda …
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Hi,
I am having parsing problems see below:
anic: Cannot decode packed binary. strconv.ParseInt: parsing "63781": value out of range
goroutine 1 [running]:
philosopher/lib/msg.callLogrus({0xcd8…
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Dear FragPipe team,
As a new user, I ran into an issue when attempting to run 'open search' using the latest version of Fragpipe.
The error occurs during PSM validation using PeptideProphet (see b…
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Hi I'm getting the following error while trying to install the package:
```
> BiocManager::install('mzR')
'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories…
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I used MSConverter to convert Agilent .d file to .mzXML file. Then use Fragpipe for database searching.
The Run was stopped. Please help!
System OS: Windows 10, Architecture: AMD64
Java Info:…
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I am new to Fragpipe. Trying to analyze data from Thermofisher. But gets stuck at the error:
Could not find protein.fas. The system could not find the specific file.
Please help!
Here is the Ru…
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Hi There
I Got the search result but the PDV can't display the spectrum.
Invalid spectrum file path. Please check it.
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**Describe the bug**
I was running the `LFQ-phospho` workflow on a set of mzML files from Bruker data. After running the whole process during the `PhilosopherFilter` step one of the job fails with `F…