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When you carry out a Protein search (on tst or prd), select the "Any" category and search for the example pathway "hsa:3082", it returns proteins that do not have the "hsa:3082" pathway, e.g. [P31749-…
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The shape of allx is 18717*500 shouldn't it be 19717x500?
rra94 updated
5 years ago
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Hey @DASpringate Curious if you already wrap the European Pubmed Central in rpubmed?
There are two different services [here](http://europepmc.org/RestfulWebService)
Seems like what is in rpubmed now…
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- precalculate a matrix of prevalance of gene-gene pairs in pubmed hits
- could color edges of network by pubmed score
- the goal: discern between spatial cors that are expected vs. novel
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As we consider new collaborations in the social, political, and educational sciences, I think it might be helpful to consider new indexing systems for publications. Even within the biomedical domain, …
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FOllow up, current opinion
https://pubmed.ncbi.nlm.nih.gov/12429822/
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### Describe the bug
The link provided for the dataset is broken,
data_files =
[https://the-eye.eu/public/AI/pile_preliminary_components/PUBMED_title_abstracts_2019_baseline.jsonl.zst](url)
The…
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[repost of a comment in the [blog](http://blog.paperscape.org/?p=1)]
![pubmed](https://user-images.githubusercontent.com/9091138/38497715-505a59ec-3c02-11e8-87dc-cafb548a6273.png)
> Are there an…
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The `pubmed-annotate` command currently truncates inputs to ~3K characters. That's not necessary with the larger context models, so it can be relaxed and/or added as a CLI parameter.
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`Error in curl::curl_fetch_memory(url, handle = handle): ignoring SIGPIPE signal`
reproduce: query pubmed for "black hole"