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There seem to be two libraries in here to use:
https://github.com/cytoscape/py2cytoscape/tree/develop/py2cytoscape/cyrest
https://github.com/cytoscape/py2cytoscape/tree/develop/py2cytoscape/data
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This issue affects me with py2cytoscape 0.7.0.
I installed py2cytoscape using pip in a Python 2.7 virtual environment on a system running Ubuntu 16.04 and Cytoscape 3.6.1.
I've been following th…
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https://github.com/cytoscape/py2cytoscape/blob/0f7a6db76362f9c768e778528816c00f9978bcc2/py2cytoscape/util/util_igraph.py#L19
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The story below is quite long, but I think it's **VERY IMPORTANT**. It could remove an enormous impediment for people trying to automate Cytoscape. **PLEASE READ IT**
While building a script for Ba…
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No Code, No Cytoscape. I just wan to do
pip install py2cytoscape on Arch Linux. It compiles some time and then exits with an error:
/usr/bin/ld: /usr/lib64/libz.a(deflate.o): relocation R_…
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When accessing Cytoscape from Python 3 using py2cytoscape, one of our users had a script that sent invalid Cytoscape JS json:
```json
"data": {
"source": ["HI-III", "BioPlex"],
"target": "17",
…
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I've found if I start up my Cytoscape instance the code present in this branch cannot connect to it
https://github.com/cytoscape/py2cytoscape/tree/develop/py2cytoscape/cyrest
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I've found if I start up my Cytoscape instance not on port 1234, the code present in this branch can connect to it, but any other commands do not work.
https://github.com/cytoscape/py2cytoscape/tr…
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I'm trying to use py2cytoscape to create network on Cytoscape. However, "lock width and height" is always applied on Cytoscape network Node-Style after I run the program, I tried to add some statem…
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Hello,
I recently discovered that if a user installs igraph, you will get a warning telling that igraph is now changed to jgraph. So py2cytoscape doesn't work then since it uses igraph.
When the impo…