cytoscape py2cytoscape issues

cytoscape / py2cytoscape

Python utilities for Cytoscape and Cytoscape.js

https://py2cytoscape.readthedocs.io

MIT License

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issues

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Question: Moving Centrality features to Python

#107 BradKML opened 3 years ago
0
py2cytoscape connection from JupyterHub

#106 hmassalha opened 3 years ago
0
Update util_networkx to work with networkx

#105 DnlRKorn opened 3 years ago
0
cytoscape.vizmap.apply fails if 3.8.2 if no network is selected

#104 jorgeboucas opened 3 years ago
0
Update util_networkx.py

#103 adamlawr-cisco opened 3 years ago
0
Fix typo in optional requirements (parakimo -> paramiko)

#102 moritzschaefer opened 3 years ago
0
problem edge bending py2cytoscape 0.7 python 3.7

#101 Benito-chem opened 4 years ago
1
Update "travis.yml" test matrix to test currently active python versions

#100 matthiaskoenig opened 4 years ago
0
problem importing cyrest from py2cytoscape (python 2.7.15)

#99 Benito-chem closed 4 years ago
3
cyclient.network.export not returning position of nodes

#98 maurodlt opened 4 years ago
0
RCy3 selectNodes equivalent function

#97 kozo2 opened 4 years ago
0
"cyclient.node.select_from_file" returns UnboundLocalError

#96 kozo2 closed 4 years ago
0
"cyclient.table.list_columns" does not work(?)

#95 kozo2 closed 4 years ago
0
"cyclient.session.open(session_url=" does not work(?)

#94 kozo2 opened 4 years ago
2
Python3 support

#93 zachary822 opened 5 years ago
0
Aggressively fix whitespace issues

#92 zachary822 opened 5 years ago
0
how to set node width

#91 mtill opened 5 years ago
2
Problem in selecting nodes in CyNetwork/CyRestClient, loading network in cyrest.client()

#90 sayonidas03 closed 5 years ago
2
Fix vizmap

#89 zachary822 closed 5 years ago
1
Fix data

#88 zachary822 closed 5 years ago
1
Cyrest not loading style from file

#87 mwang87 closed 5 years ago
5
Dropping python 2 support?

#86 zachary822 closed 5 years ago
3
Why?

#85 zachary822 closed 5 years ago
1
Read encoded text correctly using requests library

#84 zachary822 closed 5 years ago
1
Apply layout without node overlap in Cytoscape using py2cytoscape

#83 Niveda-S opened 5 years ago
1
Unlock node width and height

#82 Niveda-S closed 5 years ago
2
when a py2cytoscape version, compatible with Python 3.7.1, will be available?

#81 empet closed 5 years ago
5
how to run the example,

#80 SeekPoint opened 5 years ago
8
TypeError: the JSON object must be str, not 'bytes' when using py2cytoscape.cyrest.cyclient()

#79 yangli-ai closed 5 years ago
3
py2cytoscape: index is reset multiple times within a for loop in util.name2suid()

#78 empet closed 5 years ago
0
cytoscape.styles.getVisualProperties()

#77 jorgeboucas closed 5 years ago
0
correct indentation errors

#76 moritzschaefer closed 5 years ago
0
3 spaces instead of four lead to failure when using util_igraph

#75 moritzschaefer closed 5 years ago
1
Linking fails when installing through Arch Linux

#74 moritzschaefer closed 5 years ago
2
Invalid syntax in util.util_dataframe

#73 gaberosser closed 5 years ago
1
test notebook on container

#72 jorgeboucas opened 5 years ago
0
fixed api typo in call for add_edge from add adge to add_edge

#71 andorsk closed 5 years ago
1
Cytoscape add_edge returns invalid call. Seems typo in api call?

#70 andorsk closed 5 years ago
1
Cytoscape default style settings

#69 kzhang529 closed 5 years ago
3
Commands code cannot connect to Cytoscape Instance

#68 mwang87 closed 5 years ago
3
Functions code cannot connect to Cytoscape not on default port

#67 mwang87 closed 5 years ago
2
Which is active code

#66 mwang87 closed 5 years ago
5
Py2cytocscape renderer.render always results as none

#65 shaaaarpy closed 5 years ago
2
renderer.render method in jupyter-notebook shows an empty graph.

#64 shaaaarpy opened 6 years ago
8
Making util_dataframe.py python2 compatible.

#63 JamesPino closed 6 years ago
0
CyRest in developmental version is not working: <title>Error 405 Method Not Allowed</title>

#62 IvoLeist closed 6 years ago
2
edge get uses incorrect endpoint

#61 dotasek closed 6 years ago
0
network clone uses incorrect endpoint

#60 dotasek closed 6 years ago
0
groups may be using wrong URL root

#59 dotasek closed 6 years ago
0
201 shouldn't be considered an error

#58 dotasek closed 6 years ago
0