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e.g., if someone adds files with the following convention (see below), then the DB is automatically updated:
~~~
|- center_study_subject
info.dcm --> single dicom file (e.g. could be from t…
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Many extensions with to the BIDS format create a wish list of useful sequence details without clear instructions regarding how to implement these. It would really help to have sample DICOM files from …
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1. qmri appendix defines quantitative maps as derivatives regardless of how they were generated
https://bids-specification.readthedocs.io/en/latest/appendices/qmri.html#quantitative-maps-are-der…
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### Describe your problem in detail.
In [MRI section](https://bids-specification.readthedocs.io/en/stable/04-modality-specific-files/01-magnetic-resonance-imaging-data.html) `TotalReadoutTime` is def…
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Just tested on the bids-examples by putting some SEM.json or SPIM.json in the root folder the validator complained that those are not valid files.
This would prevent using the inheritance principle…
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Our dataset incudes 7 sites with 3 subjects per-site (the same 3 subjects were, or are to be, scanned across all 7 sites). The goal is to compare coil designs. The purpose of this issue is to develop …
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### Make query return subset of layout instead of flat list
In current state `querry` returns flat lists of found data, subjects etc. This may create some difficulties during data processing, for …
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For each subject, we have a anat and famp TB1TFL scan. For MGH and MNI subjects, the `bids_conversion.py` script determines which scan is the anatomical scan and which scan is the flip-angle map scan …
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Hi,
I can't find a solution to the following issue, if you have any clues , thanks in advance.
I'm building a template with 'antsMultivariateTemplateConstruction2.sh' with 12 sets of images . F…
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While playing with the new QC sct_deepseg feature (yay!), I noticed the segmentations are soft:
![image](https://github.com/spinalcordtoolbox/spinalcordtoolbox/assets/2482071/c58cc130-8519-4597-ab3…