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# Quality Control
I generate raw-samples.txt which has the sample_name, R1 and R2 as columns.
```
# Get R1 and R2
ls 00-RAW/ | tr " " "\n" | paste - - > doc/tmp.r1_r2.txt
# Get sample names
…
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[Quality control](http://aimcontrolgroup.com/eg/s/281/0/quality-control.htm):
Cargo Inspection AIM Control always protect high client’s right on cargo inspection on quality and quantity commodity, re…
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Type of notifications
- with blueprints
- use hardwired devices (e.g. "Send a camera snapshot when motion is detected")
- for info only:
- use persistent notification
- for critical action:
…
swa72 updated
2 months ago
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## Describe the Enhancement ##
While developing a wrapper for the Point2Grid tool via dtcenter/METplus#2540, a short-coming in the Point2Grid configuration file was discovered. Please see this [issue…
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Hi, I am just wondering if there is a recommended QC steps that is recommended for input bams?
For e.g. recommended MAPQ threshold for minimap, removing supplementary reads, etc. ?
Thanks,
Sowm…
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Quality Control Report
- Consider incorporating anatomical slices and density map functionality as part of quality control report (from @36000)
- Consider adding a visualization that builds on the s…
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Encoding to h265 NVEnc with constant quality 21 produce same bitrate in output file as constant quality 10. Problably by broken implemetation by not setting qmin and qmax for cq parameter on ffmpeg.
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With the duplication resolved #13 we can now move forward to trimming the raw data accordingly.
### fastp
Fastp is readily updated and has good documentation and not to mention the most efficient …
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### Issue Description
We'll need to functionalize the steps in [pgRNA_counts_QC.Rmd](https://github.com/FredHutch/GI_mapping/blob/main/workflow/scripts/pgRNA_counts_QC.Rmd)
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https://docs.opencdms.org/developer/api/automated_quality_control/index.html