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FredHutch
/
gimap
This is under development R package for calculating genetic interactions
https://fredhutch.github.io/gimap/
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Fix bugs in `run_qc()`and test `run_qc()`
#45
howardbaek
opened
4 days ago
0
Annotation Review after Filtering
#44
kweav
closed
4 days ago
0
start recording extra info on pg IDs
#43
kweav
closed
4 days ago
0
Test `setup_data()`
#42
howardbaek
opened
6 days ago
0
Beginning of making filtering steps all work together
#41
kweav
closed
4 days ago
0
Filtering step runs and stores result
#40
kweav
closed
4 days ago
0
Add ability to select columns for the last sample replicates
#39
kweav
closed
6 days ago
0
Add ability to select columns for the zerocount filter
#38
kweav
closed
6 days ago
0
Fix `setup_data()`
#37
howardbaek
closed
6 days ago
0
Genetic Interaction Step
#36
cansavvy
opened
2 weeks ago
0
Start with adding parameters that allow the user to select which column(s) are used in various filtering or filtering-related visualization steps
#35
kweav
closed
1 week ago
8
split up filters from plots and add tables to report
#34
kweav
closed
1 week ago
0
update QC report with two graphs
#33
kweav
closed
1 week ago
6
add file showing code for review
#32
kweav
closed
2 weeks ago
2
scratch code ki for replicate variation filter
#31
kweav
closed
1 month ago
0
Update 00-setup_data.R to switch `length` for `nrow`
#30
kweav
closed
1 month ago
0
Update 00-setup_data.R to switch ncol to nrow
#29
kweav
closed
1 month ago
0
`setup_data()` is still not working
#28
howardbaek
closed
1 month ago
3
fix nrow to ncol
#27
kweav
closed
1 month ago
0
Log fold change
#26
cansavvy
opened
2 months ago
0
Annotation schema
#25
cansavvy
closed
2 weeks ago
15
Warning message when I run `devtools::load_all()`
#24
howardbaek
opened
3 months ago
0
first commit - QC vignette description, getting_started.Rmd
#23
danieljgroso
closed
1 month ago
1
gimap suggested structure and schema
#22
cansavvy
closed
2 months ago
2
Getting Started Vignettes is incomplete
#21
howardbaek
opened
3 months ago
0
fix cpm calculations
#20
kweav
closed
3 months ago
0
Testing
#19
howardbaek
closed
1 month ago
6
Feedback on Getting Started Vignette
#18
howardbaek
closed
3 months ago
3
DRAFT: Polishing Ideas for QC code
#17
cansavvy
closed
3 months ago
2
Quality Control -- Report Making Function
#16
kweav
closed
3 months ago
3
added todo comments for clarification
#15
danieljgroso
closed
3 months ago
3
Usability Testing and Scientific Verification Steps
#14
cansavvy
opened
4 months ago
2
Review and re-add coverage calculation
#13
kweav
opened
5 months ago
0
Setting up data for analysis!!
#12
cansavvy
closed
5 months ago
2
Organization
#11
howardbaek
opened
5 months ago
0
README and documentation!
#10
cansavvy
opened
5 months ago
0
R package checks and unit testing!
#9
cansavvy
opened
5 months ago
0
Basic infrastructure: Add Dockerfile and basic testing for this repository
#8
cansavvy
closed
5 months ago
1
Docker Image
#7
cansavvy
opened
5 months ago
0
Functionalize Step 4: Calculate GI scores
#6
cansavvy
opened
5 months ago
0
Functionalize Step 3: Annotate
#5
cansavvy
opened
5 months ago
0
Functionalize Step 2: Filter and calculate Fold change
#4
cansavvy
opened
5 months ago
0
Functionalize Step 1: Quality Control
#3
cansavvy
opened
5 months ago
1
Workflow Functionalizing
#2
cansavvy
opened
5 months ago
0
Mageck compatibility
#1
cansavvy
opened
5 months ago
0