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This is the result of my sonics installation, I don't know why I have this problem, I hope to get your help.
2021-07-20 03:09:00,041 INFO Initiating simulation for sample Block
Traceback (most rec…
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Hello, I really like the process and accuracy of Jasmine.
I see in the manual and doc that this was designed to merge SVs across samples.
We would like (and we are trying ) to use it to merge SV…
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**Describe the bug**
Hi Thierry,
We've been trying to create a colony file from SNP data and I'm having trouble with a bunch of NAs being produced from seemingly nowhere - every locus is duplicated…
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Hi Thierry,
I'm running into issues with Radiator when running filter_rad() using a VCF file generated through Stacks. Additionally, my colleagues (who are running Radiator on MAC-OS) also run into…
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Hi there
I am currently calling snps in ~400 samples using bcftools mpileup | bcftools call but it is running quite slow. I have seen others have tried to speed up the process via running mpileup/c…
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Hello! Thank you for the great tool :)
I have a question and I will be grateful if you can help me~
When I run "bap2 bam -i alignment.last.bam -o bap_out -r hg19", I got the following error messag…
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This may be a little long and I apologize! I just want to make sure I am being thorough in describing my issue. Basically I am getting stuck in the ipyrad program right away, and I believe it is due t…
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Hi Thierry,
I'm not sure if you remember but about a month ago I was having some trouble with radiator converting files to rubias (#90 ).
I finally got back around to working with the data, and…
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Hello Thierry,
I'm a french student doing an internship in population genetics at the moment and I encounter some issues that are currently preventing me from going further...
I'm on Windows 10.
…
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Hi,
How to get PHASE file from a vcf file?
Thank you!