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Have update 1.54.6 but recombination module won't loadd on startup. I try to launch the AHK file from the modules folder and I get an error.
![Capture](https://github.com/user-attachments/assets/927…
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Hi Simon, I'm curious about your thoughts regarding how filtering a VCF file for LD and phasing might influence the results of ABBA-BABA tests. I have played around with different filtering parameters…
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### What's the new feature?
One form of recombination is being added as part of issue #71 - we should consider if directly solving the LP formulation, as stated in https://ora.ox.ac.uk/objects/uuid:a…
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Hello,
Thank you for this super useful tool. I was able to run it successfully. However, I have a question regarding choosing the optimum `-t `value and `-p` model. I was reading in the manual where …
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When developing the `dd_cooper` 3D domain decomposition test for #230, I noticed that the regression test succeeded for mean flux, but failed for standard deviation. The values it fails by are general…
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By default the using_free_recombination setting should be true, is is still even needed in the simulation?
Related to Issue #15
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Hello,
I am working with extremely large images 50k x 50k pixels where resolution is very important. Is there a way to first cut the image into 608 x 608 overlapping blocks/tiles/sections (of a cer…
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V10 is now out and there are a host of new features that need to be supported. See [the announcement and associated paper in Solar News](https://solarnews.nso.edu/version-10-of-the-chianti-database-re…
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According to [PVPMC "modeling steps"](https://pvpmc.sandia.gov/modeling-steps/2-dc-module-iv/diode-equivalent-circuit-models/pvsyst-module-model/) and [PVSyst help files](http://files.pvsyst.com/help/…
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In equation (7) of the [ClonalOrigin paper](https://academic.oup.com/genetics/article/186/4/1435/6063658) they write out what is quite close to a tree-by-tree description of the likelihood of an ARG. …