lh3 psmc issues - Githubissues

lh3 / psmc

Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

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Empty .psmcfa File

#61 Rashed-shou opened 2 months ago
3
Input data

#60 paul-bio opened 4 months ago
0
problem with psmc_plot.pl

#59 cyadrogarcia opened 6 months ago
1
Fraction of hets missed due to low coverage

#58 aguilar-gomez opened 7 months ago
0
A straight line in result figure.

#57 se420 opened 10 months ago
1
Input file: Resequence.BAM file Select type?

#56 wuyh0328 opened 11 months ago
0
Error while running Plot

#55 lpabonv opened 1 year ago
3
Assembly on scaffold level

#54 Meer9234 opened 1 year ago
0
Can't set mutation rate when plotting

#53 jacquelinemattos opened 1 year ago
0
How to plot multiple boostrap results in one image?

#52 cnxiaobo94 opened 1 year ago
5
hmm error

#51 ndussex closed 1 year ago
0
About the selection of reference genome

#50 cnxiaobo94 opened 1 year ago
1
Cannot run psmc code

#49 shadowtwinkle opened 2 years ago
1
Genome masking

#48 Larissa-Arantes opened 2 years ago
1
Add CI based on Github Actions

#47 martin-g opened 2 years ago
1
Segmentation fault (core dumped)

#46 kavazquez opened 2 years ago
3
How to check the recombination event?

#45 DuttaAnik opened 2 years ago
5
[Question] Is Linux ARM64 a supported architecture?

#44 gancho-ivanov opened 2 years ago
3
Bootstrapping running into erorr 'Use of uninitialized value in division (/)'

#43 elizeng opened 2 years ago
2
Old pipeline deprecated, using bcftools consensus instead?

#42 elizeng opened 2 years ago
3
Generating SAM file using ONT long-reads and Minimap2

#41 sjfleck closed 2 years ago
1
psmc: cli.c:72: psmc_parse_pattern: Assertion `isdigit(*p) || *p == '*' || *p == '+' || *p == '\0'' failed.

#40 kuangzhuoran opened 2 years ago
1
"Illegal division by zero" when executig psmc.plot.pl - sample.psmc file with NaNs

#39 AliceIob opened 3 years ago
8
gen_raw_mask.pl not working correctly

#38 NicMAlexandre opened 3 years ago
3
Sudden increases in Ne

#37 plubbe opened 3 years ago
3
pseudo-diploid

#36 7melo7 opened 3 years ago
1
Atomic time interval parameters

#35 plubbe opened 3 years ago
3
There is no plot

#34 Karimi-81 opened 3 years ago
1
problem when plotting

#33 gubrins opened 3 years ago
4
Empty .psmcfa file

#32 JuliaLopezDelgado opened 3 years ago
10
when I run psmc_plot.pl,met a problem

#31 kuangzhuoran opened 3 years ago
0
Not issues and a question

#30 dongyiyi opened 3 years ago
2
error --min-ac -

#29 rgolira opened 3 years ago
2
PSMC wrong

#28 zhoutinggan opened 3 years ago
3
Uservoice

#27 Mvwestbury opened 4 years ago
1
combining two plots

#26 davidaray opened 4 years ago
11
psmc_plot.pl error

#25 chenqing-1996 opened 4 years ago
5
Can anyone help me optimizing mutation rate for PSMC outfile

#24 SuPrSh closed 2 years ago
0
psmc plot for reference individual looks different?

#23 eggomez opened 4 years ago
1
Error while running psmc_plot.pl

#22 agesantos opened 4 years ago
4
outfile is abnormal

#21 shiyi-pan opened 4 years ago
2
Confidence interval for PSMC

#20 Homap opened 4 years ago
0
PSMC plot using psmc_plot.pl

#19 xgdong opened 4 years ago
0
Use of initialized value in division line 125

#18 jennagrimshaw opened 4 years ago
2
recommended min and max for vcfutils.pl step

#17 sjfleck opened 4 years ago
0
scale x by generation?

#16 davidaray opened 4 years ago
1
Conspecific reference genome

#15 davidaray opened 4 years ago
1
Newer versions of samtools?

#14 plubbe closed 4 years ago
0
Confusing typo in the REAME file

#13 willyrv opened 4 years ago
1
Reads used for analysis

#12 kazuaki0816 opened 5 years ago
0