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lh3
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psmc
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
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Input data
#60
paul-bio
opened
2 weeks ago
0
problem with psmc_plot.pl
#59
cyadrogarcia
opened
1 month ago
1
Fraction of hets missed due to low coverage
#58
aguilar-gomez
opened
3 months ago
0
A straight line in result figure.
#57
se420
opened
6 months ago
1
Input file: Resequence.BAM file Select type?
#56
wuyh0328
opened
7 months ago
0
Error while running Plot
#55
lpabonv
opened
8 months ago
1
Assembly on scaffold level
#54
Meer9234
opened
9 months ago
0
Can't set mutation rate when plotting
#53
jacquelinemattos
opened
9 months ago
0
How to plot multiple boostrap results in one image?
#52
cnxiaobo94
opened
11 months ago
5
hmm error
#51
ndussex
closed
1 year ago
0
About the selection of reference genome
#50
cnxiaobo94
opened
1 year ago
1
Cannot run psmc code
#49
shadowtwinkle
opened
1 year ago
1
Genome masking
#48
Larissa-Arantes
opened
1 year ago
1
Add CI based on Github Actions
#47
martin-g
opened
1 year ago
1
Segmentation fault (core dumped)
#46
kavazquez
opened
1 year ago
3
How to check the recombination event?
#45
DuttaAnik
opened
1 year ago
5
[Question] Is Linux ARM64 a supported architecture?
#44
gancho-ivanov
opened
1 year ago
3
Bootstrapping running into erorr 'Use of uninitialized value in division (/)'
#43
elizeng
opened
2 years ago
2
Old pipeline deprecated, using bcftools consensus instead?
#42
elizeng
opened
2 years ago
3
Generating SAM file using ONT long-reads and Minimap2
#41
sjfleck
closed
2 years ago
1
psmc: cli.c:72: psmc_parse_pattern: Assertion `isdigit(*p) || *p == '*' || *p == '+' || *p == '\0'' failed.
#40
kuangzhuoran
opened
2 years ago
1
"Illegal division by zero" when executig psmc.plot.pl - sample.psmc file with NaNs
#39
AliceIob
opened
2 years ago
8
gen_raw_mask.pl not working correctly
#38
NicMAlexandre
opened
2 years ago
3
Sudden increases in Ne
#37
plubbe
opened
2 years ago
3
pseudo-diploid
#36
7melo7
opened
2 years ago
1
Atomic time interval parameters
#35
plubbe
opened
2 years ago
3
There is no plot
#34
Karimi-81
opened
2 years ago
1
problem when plotting
#33
gubrins
opened
3 years ago
4
Empty .psmcfa file
#32
JuliaLopezDelgado
opened
3 years ago
10
when I run psmc_plot.pl,met a problem
#31
kuangzhuoran
opened
3 years ago
0
Not issues and a question
#30
dongyiyi
opened
3 years ago
2
error --min-ac -
#29
rgolira
opened
3 years ago
2
PSMC wrong
#28
zhoutinggan
opened
3 years ago
3
Uservoice
#27
Mvwestbury
opened
3 years ago
1
combining two plots
#26
davidaray
opened
3 years ago
11
psmc_plot.pl error
#25
chenqing-1996
opened
3 years ago
5
Can anyone help me optimizing mutation rate for PSMC outfile
#24
SuPrSh
closed
2 years ago
0
psmc plot for reference individual looks different?
#23
eggomez
opened
3 years ago
1
Error while running psmc_plot.pl
#22
agesantos
opened
3 years ago
3
outfile is abnormal
#21
shiyi-pan
opened
3 years ago
2
Confidence interval for PSMC
#20
Homap
opened
3 years ago
0
PSMC plot using psmc_plot.pl
#19
xgdong
opened
4 years ago
0
Use of initialized value in division line 125
#18
jennagrimshaw
opened
4 years ago
2
recommended min and max for vcfutils.pl step
#17
sjfleck
opened
4 years ago
0
scale x by generation?
#16
davidaray
opened
4 years ago
1
Conspecific reference genome
#15
davidaray
opened
4 years ago
1
Newer versions of samtools?
#14
plubbe
closed
4 years ago
0
Confusing typo in the REAME file
#13
willyrv
opened
4 years ago
1
Reads used for analysis
#12
kazuaki0816
opened
4 years ago
0
Use PSMC for a genome assembly constructed from genomic DNAs of multiple individuals
#11
kazuaki0816
closed
4 years ago
1
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