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I'll use this issue to leave suggested tooltip text for the react tables
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Manubot has never been good at producing space-efficient PDFs. The recent frontend updates have brought a much better experience for the HTML in-browser view. However, I think they have exacerbated th…
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Might be nice to have tooltip text for the metatype filters. Maybe they're too basic (eg Gene) to warrant tooltips, but we have them for everything else.
Edit: and source/target node
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Hi Daniel,
If I understand it correctly, you used the information about over-/under-expression from Bgee to create your Anatomy–downregulates–Gene and Anatomy–upregulates–Gene edges [[1](https://th…
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I recently discovered that `permute_pair_list` modifies the pair list it is given, in place. The returned pair list is then equivalent to the pair list that was passed as an argument to the function i…
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I'm working on upgrading `hetio` to be compatible with `py2neo` 3. Since many parts of the `rephetio` pipeline use `hetio`, what do you think the easiest way would be to test them all?
So far I've …
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I suggest changing the CSS to left justify table captions, since the main text is left justified and the figure captions are as well. For example, only the table caption in this document is center jus…
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In https://github.com/hetio/hetionet/commit/23f6117c24b9a3130d8050ee4354b0ccd6cd5b9a, we began using LFS to store large files. While this commit uses LFS, the history still contains non-LFS files. The…
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We currently have implemented the DWPC (see #45) for certain metapaths. The question is, of the 1,206 metapaths in Project Rephetio, how many will our current implementation succeed on?
You can get…
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@dhimmel I have been thinking about what we discussed regarding the unsupervised approaches we could use in the future. If I understand roughly correctly, what we want to do is implement a system whic…