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Based on a survey of the variant types used in CIViC as a starting point:
- SNVs (single nucleotide variants). e.g. `R175H`
- MNVs (e.g. dinucleotide variants). e.g. `VHL c.364_365GC>AT`
- Insert…
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Hello,
I am writing to you because I am having trouble understanding the output of my results. I have performed a RNA sequencing with RNA004 and I want to know which sites are m6A. When I get the t…
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Hi, I came across methylmix algorithm, I wanted to integrate multiple probe methylation values mapping to one gene into gene methylation level. methylmix clusters multiple probe methylation value with…
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Hey people,
I will also try to put down what I remember of Amrits conversation with us.
- Look at differential network analysis. This can be used to see the differences in networks between the…
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### Version
1
### DataCap Applicant
Genet
### Project ID
1
### Data Owner Name
NHGRI
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Websi…
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**What is the SO term name and accession?**
gRNA_gene (SO:0001264)
**Describe what you would like to change.**
Current def is "A noncoding RNA that guides the insertion or deletion of uridine res…
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### Version
1
### DataCap Applicant
Lucas Tang
### Project ID
5
### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Region
United States
### Data Owner Industry
Life …
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At sometimes, the "ref" column: “the SNP-level allele-specific read counts of the reference allele” contains the float type values, for example, DNA methylation. So, is it practical to run the ASEP so…
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**Is your feature request related to a problem? Please describe.**
At the moment, Hintikka data is used for basically all analysis in OMA book. However, I see a problem in the [MOFA section](https:/…
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### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
### Website
https://www.encodeproject.org/
###…