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Hello!
Major thanks for making such an amazing R package. I am trying to find significant motifs in my Signac data. Unfortunately, I cannot find the 'nCount_peaks' variable in my data to generate t…
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Hi, I am using Seurat version '4.3.0' and SeuratObject '5.0.1' to run Pando, but I get an error when I run find_motifs:
```
Error in validObject(.Object) :
invalid class "SeuratPlus" object: i…
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good stories
https://read01.com/ENzP8.html#.WZKxNlqg-8E
https://kknews.cc/zh-tw/science/r9682yx.html
http://www.sciencemag.org/news/2017/08/crispr-slices-virus-genes-out-pigs-will-it-make-organ-t…
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Terms impacted:
'E-box binding'
'N-box binding'
'RNA polymerase I CORE element sequence-specific DNA binding'
'RNA polymerase I enhancer sequence-specific DNA binding'
'RNA polymerase I upst…
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### Contact Details
liye466493@gmail.com
### What happened?
A bug happened!
When I used: streme -notrim -verbosity 1 -oc . -p pos.fa -n neg.fa -pvt 0.01 -minw 6 -maxw 7
I got the error: streme: u…
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Hi everyone, I am trying to use the pyscenic workflow to infer grn on my 10X scRNA dataset. I completely followed the demonstration workflow posted on SCENICprotocol cancer data sets using SKCM scRNA …
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Unlike pRPS3 and pTSA1 constructs pPGK1 construct do not correlate well with qPCR data. I am currently trying to verify if this is part of the data or an artefact introduce from the analysis pipeline.
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- [ ] Finish molQTL plotting scripts and plot coverage data for bunch of Colocalized QTL effects
- [ ] Add more GWAS. Need to edit some scripts to accommodate binary outcomes for some gwas... see (…
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**Describe the bug**
Hello, I am trying to perform run_scenicplus. It gets through part of the way, but then will just stop running and I don't know why. I'm fairly new to using Python so I'm not sur…
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Dear Jesper
I am interested in using your tool in my research project however I'm having trouble running the examples data.
```
(image) razor@razor-IS2323:/media/razor/labdata/Kadu/IMAGE$ per…