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Determine what graphics/plots we want and what libraries are available.
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At some point we'll need to deal with secondary structures that look like this:
.AAA....
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Hello, I know this is probably not a bug with the code but I was hoping someone here would know.
I intend to run this on a M1 Mac and I cannot get past the conda env create -f UFold.yml
A few thin…
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https://dx.doi.org/10.1093/nar/gkv1025
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Hello Jared,
I'm new to Nanopolish but would like to use your software for detection of RNA's native structure, similar to SHAPE-map presented during London Calling 2019. Recently, generated two se…
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I'll work on the NAR template. this issue serves as a record.
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By filing an issue to this repo, I promise that
- [x] I have fully read the issue guide at https://yihui.name/issue/.
- [x…
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Hi, I have followed the steps and successfully built some models. However, I found that the running time for generating the MSA input is extremely long, sometimes it took 1~2 days. Is this normal? How…
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Hi all again,
cc: @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
After giving some time to think, I realized we could ask slightly different for a solution the n…
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/bin/bash: bc: command not found
split: invalid number of lines: ?
RuleException:
CalledProcessError in line 104 of /opt/conda/envs/periscope/lib/python3.6/site-packages/periscope/scripts/Snakef…
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Hi dear team,
I performed RNAz prediction on an alignment of viral genomes of a specific viral species. To this aim, I first divided the alignment to windows using rnazWindow.pl, then perform RNAz …