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Here is an example of a visualization tool:
https://gtexportal.org/home/gene/SLC34A1
https://www.proteinatlas.org/ENSG00000142515-KLK3/summary/rna
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- https://github.com/ENCODE-DCC/rna-seq-pipeline
- https://www.genome.gov/sites/default/files/Multimedia/Slides/ENCODE2016-ResearchAppsUsers/ENCODE2016_strattan_slides.pdf
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Hello,
I am using STAR for alignment, and I am facing an issue while I run my file on LINUX.
Could you please assist me.
This is what I get as an error when I ran STAR.
/usr/lib/rna-star/…
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Hi there,
I want to find out what protocol I should follow when annotating a genome with short and long read RNA-Seq (nanopore) and protein data.
In this issue https://github.com/Gaius-Augustus…
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Hello!
I've been having issues adapting bulk rna seq data into cellchats pipeline. I want to compare the bulk rna sequencing reads of three purified celltypes with one purified celltype, and find w…
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Hi, @lldelisle
Here's a strange question. I hope to have your guidance.
In the first genomic region I was interested in, I could successfully plot a perfect figure. However, when I select the …
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I would like to analyze my RNA-seq samples with PluriTest. It seems that the website no longer accepts RNA-seq data. (Unless I'm just uploading the data incorrectly?) As a result, I would like to try …
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### Description of feature
Hi,
I recently came across Mikado which is a pipeline to identify the most useful or “best” set of transcripts from multiple transcript assemblies. Our approach leverages …
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@nishill has kindly prepared a handful of RNA seq experiments from the E-GEUV project on the 1kgenomes server.
This issue is added in hopes of getting better coverage of the available RNA seq exper…
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Hello
Could you inform me if the raw RNA seq data used in this analysis are publicly available for download somewhere?
Thanks,
Guillaume