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### Description of feature
Hello,
Thank you for developing this fantastic pipeline. I am currently trying to use it to process my RNAseq data (human).
This is the command I used:
```
nextflow…
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### Operating System
Windows 10
### Other Linux
_No response_
### Workflow Version
v1.2.1
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No resp…
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some methods for consideration
- versions YAML for multiqc, some examples here;
- https://github.com/nf-core/rnaseq/blob/1817d14a3a3a7d130b1fd729c5c3f9a6547b4fd5/subworkflows/nf-core/utils_nfc…
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```console
$ nf-core licences rnaseq
ERROR Couldn't find pipeline conda file: https://raw.githubusercontent.com/nf-core/rnaseq/master/environment.yml
```
Would also be nice to add a `-r` fl…
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Hi Bokai and Shuxiao,
I would first like to thank you for developing this interesting method and making it open-sourced. I found the protein annotation and spatial pattern discovery section particu…
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Hi developers,
I converted the Docker image into a Singularity image as the HPC in my institute does not have Docker installed. However, when I try to run the Singularity image, I could not run it a…
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### Description of feature
Following up on https://github.com/nf-core/rnaseq/pull/1369#discussion_r1744079079.
@MatthiasZepper Please take over this issue.
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Hi, I have read your article “Inference of immune cell composition on the expression profiles of mouse tissue” and I am looking forward to using ImmuCC in my model, but I have RNA-seq data. Here in th…
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Create branch in workflow repos and use ECR Docker image location.
Known workflows:
- [x] [rnaseq-pipeline](https://github.com/RTIInternational/rnaseq-pipeline)
- [ ] [biocloud_wdl_tools](https…
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Hi Torsten,
would it make sense to add Biotypes to the annotation, like in [eukaryotic genomes](https://www.ensembl.org/info/genome/genebuild/biotypes.html)?
I have at least one use case where this …