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@Sage-Bionetworks-Workflows/nextflow
The "minimal" implementation of the command line tool `QTLtools` is `QTLtools cis --vcf genotypes.chr22.vcf.gz --bed genes.50percent.chr22.bed.gz --cov genes.c…
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This feature would pre-populate some annotations based on existing information associated with the file.
Examples:
- If `filename` ends in .fast.qz, then set `fileFormat` to fastq
- Use locati…
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we can handle most of Excel’s vagaries but other random problems persist: handle csv encoding on the backend and frontend; meanwhile raise error indicating the encoding is not supported (e.g. it is no…
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* Add Dockerfile
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**Is your feature request related to a problem? Please describe.**
Add documentation, like a slide deck, for how to deploy the main, staging, and testing instances of the app.
**Describe the solut…
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In order to make something public, a user needs to click the 'public' button. This adds two 'hidden' users to their sharing settings anonymous and all registered Synapse users.
If someone wants to …
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Verifications are mostly done prior to json conversion. Add a set afterward that checks final output form.
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**Is your feature request related to a problem? Please describe.**
Currently schematic tests take quite some time to run, and we have to wrap the tests related to `submit` around tenacity. Find a way…