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Hello,
I am trying to apply CHOIR on my precomputed clusters from a method I developed. I am working with the PBMC3k dataset in fact.
Preprocessing is exactly followed step by step from here:
h…
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Hi,
Thanks for the great tool.
I am running the mtDNA genotyping viginette on one multiple myeloma sample that is originally a Multiome (GEX + ATAC)
This is the variants plot I get: (notice t…
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Dear scvi group,
Thanks for developing such a useful tool!
I recently got an error when trying importing `scvi` package. Please see below for more details. Would be grateful if you could pr…
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https://mp.weixin.qq.com/s/eVV3QbblZrCOUHqU-GWRJw
ixxmu updated
9 months ago
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https://mp.weixin.qq.com/s/eVV3QbblZrCOUHqU-GWRJw
ixxmu updated
9 months ago
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Dear SnapATAC2 team,
In this tutorial https://kzhang.org/SnapATAC2/tutorials/annotation.html, I think the `query` is not in raw count. How can it be concatenated together with `reference` for scVI …
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https://mp.weixin.qq.com/s/ZmnL-EnOAlMbtdXaAZXgCw
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## How to add tutorials
* Fork this repo and make a PR adding a folder here: https://github.com/scverse/scverse-tutorials/tree/main/tutorial-registry/tutorials.
- The folder must contain a `met…
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...
I'm trying to simply install cellrank into a conda environment and load it within a jupyter notebook. Seems like package version incompatibilities are present.
```zsh
conda create -c cond…
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https://mp.weixin.qq.com/s/-E9zcB7nM6DIjz6GIzUIwg
ixxmu updated
10 months ago