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despite https://github.com/dib-lab/sourmash/issues/1571, the problems in #1552 continued after using the new `remove_many` implementation until I refactored the enclosing script in #1613.
The follo…
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Hello,
I'm running this workflow:
```golang
param (
// S3 path to 10x folder
tenx string
// Full s3 file location to put the sourmash signature
output string
//…
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(Some of this might be 5.0 material, because they change the file format in backwards-incompatible ways)
A few issues --
* in https://github.com/dib-lab/sourmash/pull/1346#pullrequestreview-6108…
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I recently wrote a snakefile to subtract a one signature from another. I noticed that my implementation of sourmash sig subtract, which I wrote using the python API but basically copied from sourmash …
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curious how well our underlying infrastructure can work for handling other kinds of fracminhash sequences! maybe could be explored using plugins.
https://github.com/St4NNi/jam-rs
ctb updated
11 months ago
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It looks like it is not taking into account the unidentified minhashes that are subtracted from the query sketch before entering into `GatherResult`.
this may be the source of the difference notice…
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This is a feature request (as discussed with @bluegenes earlier today) to have the k-mers that correspond to the hash values also returned when doing a `sourmash sketch`. I was made aware of [sourmash…
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per https://github.com/sourmash-bio/sourmash/issues/267#issuecomment-1117633898
@dkoslicki says:
> In the FracMinHash sketches, does sourmash save the k-mers that led to the hash values, or just t…
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In re this paper,
[Debiasing FracMinHash and deriving confidence intervals for mutation rates across a wide range of evolutionary distances](https://www.biorxiv.org/content/10.1101/2022.01.11.47587…
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from https://github.com/dib-lab/sourmash/issues/1226#issuecomment-748382043, @luizirber says:
>The challenge then becomes recalculating the reference sigs with smaller scaled values (100?), and effic…