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Hi,
I tried to install the required packages on a freshly set up conda environment with Python 3.6.9 and pip 19.2.3. After the command `pip install -r requirements.txt` I ran into a problem with scan…
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I think we should introduce a standardized “mask” argument to scanpy functions. This would be a boolean array (or reference to a boolean array in `obs`/ `var`) which masks out certain data entries.
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Thank you for publishing codes of your paper. Could you provide the codes for pre-processing datasets?
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### What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
### Please describe your wishes
It would be extremely helpful …
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### What kind of feature would you like to request?
Other?
### Please describe your wishes
Hi! I [tried](https://github.com/VPetukhov/ngschool2023-bayesian) running scanpy using [JupyterLite](https…
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It seems that the following tests on the master branch if scanpy is also installed when the tests run:
I added this to `requirements_tests.txt`:
```
scanpy==1.4.6
```
pytest results in travis…
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Hello !
I encounter an error with your tool `Cluster, infer trajectories and embed with scanpy (Galaxy Version 1.4.4.post1+galaxy3)` when using it for the option `tl.paga`. I tried your test-data …
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Hi all! I wanted to make you aware of a caching extension for scanpy and scvelo that @michalk8 and myself have developed called [scachepy](https://github.com/theislab/scachepy) and to kick off a discu…
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Hi Kai,
I found that the description of read_mtx is not clear.
1. obs_names: File that stores the observation names.
- obs_name_file would be better, otherwise, it's hard to know it's a file.…
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I've experienced the following issues with running the demo so far:
1) Importing scanpy withput downgrading matplotlib to 3.4 produces this error:
imported three packages: ------------------------…