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= Description =
- Provide the API for adding or removing parameters in SBML models through the Change mechanism in SED-ML.
= Context =
- Parameters are used in reaction nodes in the SBML language; it…
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= Description =
- Provide the API for adding or removing reactions in SBML models through the Change mechanism in SED-ML.
= Context =
- Biochemical reactions are central to the SBML language; it shou…
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= Description =
- Provide the API for adding or removing compartments in SBML models through the Change mechanism in SED-ML.
= Context =
- Compartments are an important element of the SBML language, …
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# Issue
Currently, in `L1V3` it is not defined out the output results should be stored.
We need a way to store `outputs` in Files/Combine Archives. I.e. it is not sufficient to define the output, bu…
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## Describe the issue
I would like to discuss a portable method to _preserve_ carriage returns when using `sed` and `awk`.
The use-case is: I'm working on a script to process a file that may hav…
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Example document:
```xml
```
The snippet below illustrates the issue. The SED-ML elements inher…
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- [x] Speed up JSON encoding. Done in #4288.
- [x] Extract specifications of manifest from manifest file (in S3) rather than COMBINE archive file: ~0.3 s.
- [x] Enable COMBINE-API to extract mani…
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= Description =
- Provide the API for adding or removing species in SBML models through the Change mechanism in SED-ML.
= Context =
- Biochemical species are central to the SBML language; it should b…
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My impression of the attached Copasi file is that it is running a 2D parameter scan, where you vary one parameter over a certain dimension, and at every step in that process, you also vary another par…
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Model [01186](https://github.com/sbmlteam/sbml-test-suite/blob/7ab011efe471877987b5d6dcba8cc19a6ff71254/cases/semantic/01186/01186-model.m) (steady state metabolic model) is expected to pass in COBRAp…