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Hi @gaofan83,
First of all, I'd like to thank you for developing a kind of script to obtain a cell-by-perturbation matrix. I'm a newbie to Perturb-seq data analysis. I'm trying to learn Perturb-seq…
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https://mp.weixin.qq.com/s/kvaV48BBtRrKvGZUJYXgLw
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Dear Caibin,
I encountered an error upon calling the `train()` method. Below is the abridged
`scar_obj.train(epochs=400, batch_size=256,)`
```
..Running VAE using the following param set:
.…
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https://mp.weixin.qq.com/s/KNwy4HfgbXTB_63Nf3jZWA
ixxmu updated
2 years ago
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https://mp.weixin.qq.com/s/KNwy4HfgbXTB_63Nf3jZWA
ixxmu updated
2 years ago
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Hello,
I was wondering if I can use your tool to calculate the on- and off-target scores of sgRNAs that I have instead of those that are selected by this tool. For example, I have a screen that use…
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Hi Aditya et al.
Thank you so much for publishing multicrispr. It's been working really well for our needs! I'm currently running into a bit of a problem with Doench2016 scoring. We are trying to s…
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https://mp.weixin.qq.com/s/e7NIVKjGE6WYYphwCre88Q
ixxmu updated
2 years ago
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Either of them should save these cells from the cytotoxicity coming from the TCRs we have discovered. If we can work this out, it will make it easier to come up with a candidate list once we are done …
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`FindAllMarkers` returns the adjusted p-values as returned by calls to `FindMarkers` unmodified. But it should adjust for testing multiple groups too. One way to achieve FDR (for `test.use="DESeq2"`) …