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Not an issue but doc clarification related to https://intertwin-eu.github.io/interLink/docs/tutorial-admins/deploy-interlink#requirements-1
Due to security and test reasons, I would like to put the…
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I have an issue where multiple highly-parallel `downloadcmd` jobs collide temporary files at the `~/NDA/nda-tools/downloadcmd/packages/${PACKAGE_ID}/.download-progress` folder. I'm thinking this issue…
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The most commonly used job scheduler with Singularity or bioinformatics analysis jobs is Slurm. Here are its benefits:
- load balancing between multiple nodes
- limiting ram/process job size
- …
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In my hybrid runs on Virgo the sampler crashes sometimes. @NGoetz told me that the problem is due to different CPUs of the nodes (intel vs. amd) of the cluster. If the processor of the node used to co…
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i am trying to create a sclurm cluster on kubernetes (azure kubernetes service). but the slurmd pod keeps crashing giving error "Couldn't find the specified plugin name for cgroup/v2 looking at a…
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Hey AutoMD team,
we have it working now , It works through stage 1-10. From stage 3-10 as it will be using a GPU , it creates a slurm job for every stage , is there a way to tell it to run all 7 gpu…
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Hoi,
after a long while, I tested again and apparently the previous fix stopped working. That does not make any sense, so probably, I am doing something wrong.
With
```console
$ cat ~/.conf…
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[...] Could you advise me on how to submit a SLURM job with the pipeline, please? I have tried, but it does not read the lib installed in the conda envs.
_Originally posted by @ccruizm in https://…
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As of #1145, the two following ways of setting a SLURM account will be forbidden:
1. Via the job worker_init variable
2. Via the `WorkflowTask.meta["account"]` value
Not fully addressed yet: what…