-
Working with sequences alignments, the methods for alignment usually returns a tuple with the score of the alignment.
However, this score is not always very easy to interpret (is it good or bad?).…
-
Hi,
This is more of a question than an issue.
I was playing around with `mmseqs alignall` intending to see how it works. I think maybe it is in development.
I took a cluster I had and run `al…
-
After testing out the striped smith-waterman algorithm on some largish datasets, I'm noticing a failure that is not expected. Below is a small test case replicating this issue (blosum matrix can be f…
-
```
What steps will reproduce the problem?
1. Build genome and reads .DAT files
2. Make jump databases
3. Attempt to align ~5M reads to the genome
What is the expected output? What do you see instead…
-
```
What steps will reproduce the problem?
1. Build genome and reads .DAT files
2. Make jump databases
3. Attempt to align ~5M reads to the genome
What is the expected output? What do you see instead…
-
Questions 2: Why didn't single-end data use JNI to speed up? (JNI: bwamem use SIMD)
-
### What is the title of the roadmap you are submitting?
Roadmap to Bioinformatics
### Roadmap Link
# Bioinformatics Roadmap
**0. Why Bioinformatics?**
- **What is Bioinformatics?** Bioinfo…
-
Dear all,
I'm on a HPC cluster and when trying in to install, I get some errors in the `install.sh` script, more precisely at execution of the `make` script in the `tools/HaploConduct` folder. I def…
-
Please describe:
1. What you were trying to do
2. What you wanted to happen
3. What actually happened
4. What data and command line to use to make the problem recur, if applicable
Hi, I am tr…
-
Hi,
Thank you for providing the module.
I was wondering whether you could provide information on the algorithms used?
e.g. Smith Watermann?
(While your code is well structured I am getting a bit…