-
Would be nice to have a spatial ccm implementation here, especially for ecological applications.
See:
https://cran.r-project.org/web/packages/multispatialCCM/multispatialCCM.pdf
https://esajourna…
-
NB: The binding errors present in 0.9.0 -> 0.9.2 prevent this from being checked for those versions, so exactly when this started is a little fuzzy.
For a query along the lines of (note: for v0.8.1…
-
N = N * 2
mesh = UnitSquareMesh(N, N, diagonal="crossed")
# ====================Time===================
dt = 1e-5
num_steps = 10
T = dt * num_steps
I get an error whe…
-
[AlertsMilestones.xlsx](https://github.com/AtlasOfLivingAustralia/alerts/files/15145688/AlertsMilestones.xlsx)
Spatial category priority:
1. National, State & Shape
AUS_CEBO - National boundary -…
-
`filter_spatial` explicitly mentions support for points and lines (alongside polygons) in the provided geometry.
While `spatial_extent` in `load_collection` is most commonly used with a bounding bo…
-
Hi,
I was running a spatial dataset of size 2,419 sampling units, 17 covariates (8 continuous covariates with 2nd order enabled plus 1 intercept), 3 species, and 1 spatial random level. I found tha…
-
We can imporve the flexibility of the spatial pattern by letting the user set the vgm model instead of a value.
Can we implement edge effects for spatial patterns? E.g. only clusters in the middle?
-
User Story:
As a researcher, I want the ability to adjust the opacity for spatial images so I can control the opacity and allow me to visualize certain regions of the tissue if the original image qua…
-
## Description
Implementation of sliding window (inspired by [Kasumi](https://www.biorxiv.org/content/10.1101/2024.03.06.583691v1)) over a spatial neighbourhood or view.
Input:
- window size
…
-
I try to load a h5ad saved after cell2location without other operations.
visx=schard::h5ad2seurat_spatial('cell2location.spatial.scRNA.h5ad')
Error:
The h5ad seems to contain multiple visium sample…