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Hi,
I was looking into the vignette script you provided for the Thrane melanoma dataset and especially how to do the DE analysis
using the seurat_cluster_DE function (http://www.ezstatconsulting.c…
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### Who is the audience?
_Who might want to know this? What other groups or organizations might be interested?_
* Anyone working or wanting to start working with spatial data/GIS.
### Why is th…
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Hi,
Wonderful job!
I have searched through many articles and am looking for a Shiny app that can handle spatial transcriptomics data in a similar manner to how [Shinycell](https://github.com/SGDDN…
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Hi there,
I wanted to express my appreciation for the intriguing and innovative STT method you've developed. It's truly fascinating, and I've been excited to explore the example code you've provide…
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Need content for Ongoing Curriculum: Spatial Analysis Tools
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Problem:
We are running this script on an FME server (FME Flow), and therefore not explicitly logged into the portal via ArcPro
We confirmed that within the FME PythonCaller we can SignInToPortal /…
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Calculate coverage (sensu Chao) of various spatial scales and pick one for analysis:
- Tow
- Equal-area grids
- Strata
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Soo, forking from #29, here are some ideas for things to include in a spatial analysis module:
- rgeos
- rgdal
- maptools
- rastor
- sp
- intro to GIS ([thanks](https://github.com/remi-daigle/GIS_mapp…
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Currently, squidpy focusses mostly on local [spatial neighborhoods ](https://squidpy.readthedocs.io/en/stable/notebooks/tutorials/tutorial_vizgen_mouse_liver.html#neighborhood-enrichment) for niche an…
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Hi,
I'm trying to run the tutorial on the striatum dataset but I got this error message:
![Screenshot 2024-06-12 at 3 56 19 PM](https://github.com/Czh3/iSpatial/assets/50332096/d71683d2-b7ba-487…