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Hi, I have some questions about using RMATS
1. If I only want to test how much AS is contained in a sample (containing 3 biological replicates) instead of differential variable shear, the followin…
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I have used Bisbee to call significant alternative splicing events, and I would like to provide sequences for these alternatively spliced proteins. While the default scripts of Bisbee do not allow for…
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Hi! Thank you for your tool! I'm new to rMATS and now working on the version 4.1.1. I hope to process one single bam file and get the "Inclevel1" for further analysis, so I use `--statoff` and my code…
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The run is complete, why the `summary.txt` is empty?
```bash
conda activate ~/rmats_turbo_v4_3_0/conda_envs/rmats
python rmats.py --s1 s1.txt --s2 s2.txt \
--gtf ref/gtf/Mus_musculus.GRCm38.…
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i have run the command as following:
_rmats.py --b1 b1.2.txt --b2 b2.2.txt --gtf /home/dell/database/hg19/gencode.v39lift37.annotation.gtf --od /home/dell/rmats2 --tmp /home/dell/tmp2 -t paired --rea…
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Hello,
I was having issues building rMATS in my system, therefore I downloaded it via an env using Bioconda with Python version 3.10. I seem to be having an issue I can't quite figure out. I downloa…
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Hi Woody,
Me again!（：
I recently scrutinized all the result files and came across the following 2 questions:
1. Is the PSIsigma_r10_ir3.txt file filtered from the PSIsigma.db file? If so, could y…
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Hello, everyone!
I encountered a problem when using collectionFS
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```
1. PUT.................... 503 (Service Unavailable) cfs_up…
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For kernel-accelerated tailscale, we need an implementation of tstun that does its work inside the kernel, aided by ebpf.
Ironically, this is the harder part of kernel-accelerating Tailscale: in ad…
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I use rmats（4.1.2）in Xshell installed by conda with command
**conda install -c bioconda rmats**
to carry out alternative splice analysis，I use the command blow,my python version is 2.7,becasue usin…