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PSI-Sigma
PSI-Sigma
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Some questions about “Event Type”
#67
happypiggyzjx
closed
1 week ago
3
Individual PSI values of the samples and IR.out.tab column information
#66
Gtripathi-ai
closed
3 weeks ago
4
Can't locate statistics/R.pm in @INC
#65
happypiggyzjx
closed
3 weeks ago
8
sorted.txt file is empty while log files have no errors
#64
Gtripathi-ai
closed
1 month ago
11
P-Value and FDR (BH) All 1.0
#63
QingCheZhang
closed
1 month ago
1
specifies an unknown reference name. Continue anyway. Can't open bam
#62
TJiangBio
closed
1 month ago
4
IR.out.tab files including r10_ir3.sorted.txt file are empty and no error is reported by PSI-Sigma version 2.3
#61
Gtripathi-ai
closed
2 months ago
8
PSI sigma does not accept Sj.out.tab file from STAR aligner
#60
mohamedbahru
closed
1 month ago
1
Handling strand specific reads in psi-sigma
#59
TomerGold1998
closed
3 months ago
1
Run docker pipeline4.0 but receive 0 events
#58
Chris-ZhangZ
closed
7 months ago
2
Sorting the GTF file
#57
EfiRahamim
closed
8 months ago
3
No such file or directory
#56
ESWRKJ
closed
9 months ago
4
singularity run error
#55
ESWRKJ
closed
10 months ago
2
Number of events = 0
#54
Galaxy154
closed
8 months ago
15
Event type
#53
ktruve
closed
8 months ago
13
Permission errors using docker
#52
EfiRahamim
closed
9 months ago
6
No results for long-read RNA-seq data
#51
ksmcu
closed
10 months ago
10
How to interpret MES ?
#50
Djoudjou2
closed
11 months ago
4
motif discovery
#49
parsboy66
closed
1 year ago
5
Can't find SJ.out.tab
#48
ktruve
closed
1 year ago
3
gene.id issue
#47
chualec
closed
1 year ago
10
No such file or directory at (eval 1) line 23.
#46
chualec
closed
1 year ago
1
interpretting output results
#45
parsboy66
closed
1 year ago
4
Can't find wings in the database
#44
SignorLab
closed
1 year ago
3
How N and T are calculated ?
#43
Djoudjou2
closed
1 year ago
1
Can I use gtf files from the genecode database? How do I sort gtf files from genecode
#42
geng-lee
closed
1 year ago
2
I don't understand what these two files（groupa.txt and & groupb.txt） are used for ？
#41
geng-lee
closed
1 year ago
1
need comment on the PSI values
#40
umranyaman
closed
1 year ago
2
groupa-txt is not found. exit.
#39
phlicht
closed
1 year ago
4
PSI doesn't run- the parameter window is presented insted
#38
eladzis
closed
2 years ago
4
No results
#37
eladzis
closed
2 years ago
10
Can't find the groupa and groupb files
#36
eladzis
closed
2 years ago
10
Attempt to reload PDL/GSL/CDF.pm aborted
#35
umranyaman
closed
2 years ago
16
Input files not found in Docker
#34
CherWeiYuan
closed
2 years ago
6
Error issue
#33
wkdgksk
closed
2 years ago
13
some trouble in longread-gene-expression.pl to calculating PSI
#32
changeran
closed
2 years ago
7
question in file SJ.out.tab can't write in.And the PSIvalue can't calculate.
#31
changeran
closed
2 years ago
1
Some issues for installing PDL
#30
lijinw
closed
2 years ago
3
Adding AS classification to PSIsigma_r4_ir3.txt.tar.gz
#29
pre-mRNA
closed
2 years ago
6
Fix typos
#28
mohawk2
closed
3 years ago
0
irmode = 0, report no results
#27
mhjiang97
closed
3 years ago
5
no .IR.out generated
#26
mhjiang97
closed
3 years ago
1
troubles about installing module PDL::Stats
#25
mhjiang97
closed
3 years ago
4
Question on order of PSI values in results file
#24
husensofteng
closed
3 years ago
2
I can't get PSIsigma.db
#23
Qijing0416
closed
3 years ago
1
[minor] trying to index where it doesn't make sense
#22
AMChalkie
closed
3 years ago
1
Better error on awk without "and" function?
#21
AMChalkie
closed
3 years ago
1
unnecessary sort?
#20
AMChalkie
closed
3 years ago
4
long reads RNA-seq dataset
#19
JamalEH
closed
3 years ago
3
Replicate samples
#18
nourelislam
closed
3 years ago
5
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