wososa PSI-Sigma issues

wososa / PSI-Sigma

PSI-Sigma

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issues

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Different read length

#70 EfiRahamim opened 1 week ago
2
Is the .bam file in the groupa.txt and groupb.txt files, fixed in relation to the control group, experimental group?

#69 happypiggyzjx closed 4 weeks ago
3
Some questions about output files

#68 happypiggyzjx closed 2 months ago
3
Some questions about “Event Type”

#67 happypiggyzjx closed 3 months ago
3
Individual PSI values of the samples and IR.out.tab column information

#66 Gtripathi-ai closed 3 months ago
4
Can't locate statistics/R.pm in @INC

#65 happypiggyzjx closed 3 months ago
8
sorted.txt file is empty while log files have no errors

#64 Gtripathi-ai closed 4 months ago
11
P-Value and FDR (BH) All 1.0

#63 QingCheZhang closed 4 months ago
1
specifies an unknown reference name. Continue anyway. Can't open bam

#62 TJiangBio closed 4 months ago
4
IR.out.tab files including r10_ir3.sorted.txt file are empty and no error is reported by PSI-Sigma version 2.3

#61 Gtripathi-ai closed 5 months ago
8
PSI sigma does not accept Sj.out.tab file from STAR aligner

#60 mohamedbahru closed 4 months ago
1
Handling strand specific reads in psi-sigma

#59 TomerGold1998 closed 5 months ago
1
Run docker pipeline4.0 but receive 0 events

#58 Chris-ZhangZ closed 10 months ago
2
Sorting the GTF file

#57 EfiRahamim closed 11 months ago
3
No such file or directory

#56 ESWRKJ closed 1 year ago
4
singularity run error

#55 ESWRKJ closed 1 year ago
2
Number of events = 0

#54 Galaxy154 closed 11 months ago
15
Event type

#53 ktruve closed 11 months ago
13
Permission errors using docker

#52 EfiRahamim closed 1 year ago
6
No results for long-read RNA-seq data

#51 ksmcu closed 1 year ago
10
How to interpret MES ?

#50 Djoudjou2 closed 1 year ago
4
motif discovery

#49 parsboy66 closed 1 year ago
5
Can't find SJ.out.tab

#48 ktruve closed 1 year ago
3
gene.id issue

#47 chualec closed 1 year ago
10
No such file or directory at (eval 1) line 23.

#46 chualec closed 1 year ago
1
interpretting output results

#45 parsboy66 closed 1 year ago
4
Can't find wings in the database

#44 SignorLab closed 1 year ago
3
How N and T are calculated ?

#43 Djoudjou2 closed 1 year ago
1
Can I use gtf files from the genecode database? How do I sort gtf files from genecode

#42 geng-lee closed 1 year ago
2
I don't understand what these two files（groupa.txt and & groupb.txt） are used for ？

#41 geng-lee closed 1 year ago
1
need comment on the PSI values

#40 umranyaman closed 2 years ago
2
groupa-txt is not found. exit.

#39 phlicht closed 2 years ago
4
PSI doesn't run- the parameter window is presented insted

#38 eladzis closed 2 years ago
4
No results

#37 eladzis closed 2 years ago
10
Can't find the groupa and groupb files

#36 eladzis closed 2 years ago
10
Attempt to reload PDL/GSL/CDF.pm aborted

#35 umranyaman closed 2 years ago
16
Input files not found in Docker

#34 CherWeiYuan closed 2 years ago
6
Error issue

#33 wkdgksk closed 3 years ago
13
some trouble in longread-gene-expression.pl to calculating PSI

#32 changeran closed 2 years ago
7
question in file SJ.out.tab can't write in.And the PSIvalue can't calculate.

#31 changeran closed 3 years ago
1
Some issues for installing PDL

#30 lijinw closed 3 years ago
3
Adding AS classification to PSIsigma_r4_ir3.txt.tar.gz

#29 pre-mRNA closed 3 years ago
6
Fix typos

#28 mohawk2 closed 3 years ago
0
irmode = 0, report no results

#27 mhjiang97 closed 3 years ago
5
no .IR.out generated

#26 mhjiang97 closed 3 years ago
1
troubles about installing module PDL::Stats

#25 mhjiang97 closed 3 years ago
4
Question on order of PSI values in results file

#24 husensofteng closed 3 years ago
2
I can't get PSIsigma.db

#23 Qijing0416 closed 3 years ago
1
[minor] trying to index where it doesn't make sense

#22 AMChalkie closed 3 years ago
1
Better error on awk without "and" function?

#21 AMChalkie closed 3 years ago
1