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It should be possible to use a standard relayer API instance as a massive source.
AusIV updated
6 years ago
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Currently the SraRunTable.txt is coming from the "Metadata" tab in the NCBI SRA Run Table web GUI. We'll need to find a way to automatically download this table.
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Hi again! Some of the .sra runs I'm working with seem to have been split into smaller .sra runs. From my understanding, that means I have to merge the .bam files after aligning each of these files. Wi…
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This is checkup ticket for cdevoto to respond to for actions that need to be taken for SILVA and SRA inserts.
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I noticed that appending a value via sample modifiers in the project config will not override a column value if it already exists in the sample.csv table, e.g.
```
name: looper_advanced_test
pep_…
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Hi @colindaven @sannareddyk @B1T0 @Colorstorm @BioNij
Wochenende ran well when we inputed cfdna fastq profiles containing human reads as well with other pathogenic reads.
We were interested in…
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Hello!
Thank you very much for your contributions and your publicly available data!
I have a question regarding the 11 genomes mentioned in your article. Could you kindly let me know if it is po…
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As reported in https://github.com/ewels/sra-explorer/issues/14 and mentioned in [this blog post](https://ncbiinsights.ncbi.nlm.nih.gov/2019/10/17/users-of-the-sra-ftp-site-try-the-sra-toolkit/), the N…
ewels updated
3 years ago
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### Data Owner Name
National Library of Medicine (NLM)
### Data Owner Country/Region
United States
### Data Owner Industry
Resources, Agriculture & Fisheries
### Website
https://www.ncbi.nlm.ni…
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Hi !
Thank you for snakemake,
I'm working on a project that aims to analyse big files (SRA files) and i want to store them in GCP buckets.
I'm working on a Google cloud plateform Virtual mac…