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Hello,
I'm glad to see your project, which intergrates 3 main methods for WSI normalizing. It's useful for what I am doing now. But I have a problem to inquire you. I have put this WSI Normali…
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Dear All, I have been trying to apply the warpset() for normalization to correct the batch effect among my channels but unfortunately I am getting the following error:
> Error in `contrasts
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Hello, I plan to use your code on our own svs H&E-stained Whole Slide Images. But I did not find any documentation in your repo, could you provide more information on the input data preprocessing and …
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Excellent tool. We are likely to cite you in the future.
Would you consider building out a Jax backend?
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Dear,
I find the ANCOM-BC approach to identify deferentially abundant taxa very interesting and was wondering if the estimated sample-specific offset term could be replaced by a known sampling frac…
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It is now clear that this feature aggregation model will only serve a certain feature set (meaning a certain dataset line), and is not developed to be able to aggregate any feature set (it is only inv…
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This is a follow-up on [PIDapalooza 2016](https://github.com/Daniel-Mietchen/events/blob/master/PIDapalooza-2016.md) and could feed into a submission to PIDapalooza 2019, as per
https://github.com/Da…
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Hello. Thank you for developing this software. I tested it recently with some of our mouse lung H&E sections. It doesn't seem to have worked that well. Perhaps you can provide some suggestion to get i…
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For context, see https://github.com/broadinstitute/2021_09_01_VarChAMP/issues/5#issuecomment-1642753159 and the comments that follow
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New data has been generated and transferred to @bethac07.
Here is the per well metadata for the plate.
[cmQTL_CRISPRi_metadata.xlsx](https://github.com/broadinstitute/cmQTL/files/9526819/cmQTL_CR…