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broadinstitute
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cmQTL
High-dimensional phenotyping to define the genetic basis of cellular morphology
BSD 3-Clause "New" or "Revised" License
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Cleanup
#75
shntnu
closed
1 year ago
0
Delete presentations directory
#74
mtegtmey
closed
1 year ago
0
Create analysis
#73
mtegtmey
closed
1 year ago
0
Add analysis code from Jatin and Samira
#72
shntnu
closed
1 year ago
1
CRISPRi validation of rare variant associations
#71
mtegtmey
opened
1 year ago
47
pulling profiles off github
#70
mtegtmey
closed
2 years ago
0
Project reboot notes
#69
shntnu
opened
2 years ago
0
Update documents etc
#68
shntnu
closed
1 year ago
0
Are any of the 3 main features in the paper associated with mRNA levels of genes
#67
shntnu
closed
2 years ago
3
Cell segmentation process for schematic figure
#66
jatinarora-upmc
closed
2 years ago
5
Nov 2020 Discussions (associations with PDCD11)
#65
jatinarora-upmc
closed
2 years ago
3
Nov 2020 Discussions (associations with PRLR)
#64
jatinarora-upmc
closed
2 years ago
48
Nov 2020 Discussions (associations with znf436)
#63
shntnu
closed
2 years ago
14
Nov 2020 Discussions (associations with PRLR)
#62
shntnu
closed
2 years ago
1
General questions on Manuscript
#61
jatinarora-upmc
closed
2 years ago
1
Add load data and re-run select images
#60
shntnu
closed
3 years ago
0
Instructions for adding slides to the repo
#59
shntnu
closed
3 years ago
0
update new slides
#58
shntnu
closed
3 years ago
0
Added slides
#57
shntnu
closed
3 years ago
0
Sep 15, 2020 Discussions
#56
shntnu
closed
2 years ago
3
Update plate 7 images
#55
shntnu
closed
3 years ago
0
Sep 1, 2020 Discussions (TADs instead of genes)
#54
gwaybio
closed
2 years ago
1
Predict cell health readouts
#53
shntnu
closed
3 years ago
2
New plate 7 NA analysis
#52
shntnu
closed
3 years ago
0
Adding cell health prediction notebook
#51
gwaybio
opened
3 years ago
0
Update cell counts
#50
shntnu
closed
3 years ago
0
Processed new batch 2020_07_22_Batch7
#49
shntnu
closed
3 years ago
0
Process new batch 2020_07_22_Batch7
#48
mtegtmey
closed
3 years ago
32
July 20 2020 Discussions (cell count confounders, cell health predictions)
#47
shntnu
closed
2 years ago
18
Update bash script
#46
shntnu
closed
4 years ago
0
More fields
#45
shntnu
closed
4 years ago
0
June 15 2020 Discussions (figuring out how to triage features based on reproducibility and interpretability)
#44
shntnu
closed
2 years ago
3
May 18 2020 Discussions (NaN-valued and zero-valued features)
#43
shntnu
closed
2 years ago
8
Typos
#42
shntnu
closed
4 years ago
0
Report NA cells
#41
shntnu
closed
4 years ago
0
Inspect plate 7
#40
shntnu
closed
4 years ago
0
Clarify date
#39
shntnu
closed
4 years ago
0
Update README.md
#38
shntnu
closed
4 years ago
0
Clarify which version of the pipeline was used
#37
shntnu
closed
4 years ago
0
list of sampled images now have all available metadata also saved out
#36
shntnu
closed
4 years ago
0
Download sample images
#35
shntnu
closed
3 years ago
17
Update README.md
#34
shntnu
closed
4 years ago
0
Fix paths
#33
shntnu
closed
4 years ago
0
Clarifications about Cell Painting data
#32
shntnu
opened
4 years ago
17
Process 2020_03_05_Batch6
#31
shntnu
closed
4 years ago
0
Process new batch 2020_03_05_Batch6
#30
shntnu
closed
4 years ago
30
Meta data of the donors of cell lines
#29
jatinarora-upmc
closed
4 years ago
4
add single cell SQLite links
#28
shntnu
closed
4 years ago
0
Inspect all profiles
#27
shntnu
closed
4 years ago
0
Recreate variable selected profiles
#26
shntnu
closed
4 years ago
3
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