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This workflow makes sense to me:
```python
starfish.image.Filter.
help(starfish.image.Filter.WhiteTophat)
wth = starfish.image.Filter.WhiteTophat(masking_radius=5)
...
```
For singletons, …
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### Describe the bug
`aiohttp` fails to connect to `pypi.org` which has DNS entries for IPv6 and IPv4 but the host I am using has no IPv6 connectivity.
Looks very similar to https://github.com/aio-l…
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There are many animal models (including the starfish, cuttlefish and stingray) are mentioned in your paper and a user interface is shown in your [video](https://www.youtube.com/watch?v=I2ylkhPSkT4) to…
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Hi,
We've been seeing intermittent failures when building the mate-utils package in Debian, which uses itstool in its build script:
lars@starfish:~/mate-utils-1.20.2/gsearchtool/help/pt$ itstool…
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## Making starfish organization more intuitive
I am finding it a bit confusing to navigate parts of the _starfish_ codebase. Specifically, I sometimes feel I have to work harder than I should to fi…
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"Turn on white lights" turns on 4 different fauxmo devices, and often getting the following crash:
AsyncClient::free (this=0x0) at /usr/local/src/Starfish-idf/main/AsyncTCP.cpp:1002
1002 if(!_…
pvint updated
3 years ago
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cF. https://spacetx.slack.com/archives/CAR91U354/p1535389979000100?thread_ts=1535380102.000100&cid=CAR91U354
```
2018-08-28 10:23:04,280 [ scc.git] DEBUG [master 53c8a39] merge master -Dall -S…
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Followed by the starfish_tutorial.pdf, Sequenza was used to call CNV, here is my commond
```
sequenza-utils bam2seqz \
--normal /data1/HepG2_test.rmdup.bam \
--tumor /data1/HepG2_test.rmdup.bam …
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I was looking at some vague reports that `nix upgrade-nix` may not be working, so I tried a dry run command and got an amusing error:
```
$ nix upgrade-nix --dry-run
error: Nix on NixOS must be u…
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https://github.com/spacetx/starfish/blob/0106f031edc641ae0fef595548d9b1030679d591/starfish/core/imagestack/imagestack.py#L1057