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Dear authors,
I am attempting to run quast on some metagenomic assemblies. It seems that quast is able to download some of the references, however it terminates after a certain point, even if I repea…
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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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Failure on AMRfinder run, error is printed below
```shell
Feb-27 14:56:01.558 [Task monitor] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for
task: name=PHOENIX:PHOENI…
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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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The upper respiratory tract microbiota of healthy adults is affected by Streptococcus pneumoniae carriage, smoking habits, and contact with children – A. Cristina Paulo et al. – Microbiome 2023
DOI: …
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The _Listeria monocytogenes_ database on bacpop.org is missing the required graph file. I have only tested this for the reference database, as the full sample set was taking too long to download. The …
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Beginning with sequence-based searches of the literature via PaperBLAST and using the sequences acquired from PomBase, UniProtKB
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Please provide as much information as you can:
* **Suggested term label:**
* **Definition (free text)**
* **Reference, in format PMID:#######**
(REQUIRED)
* **Gene product name and I…
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For the GO-PathGO alignment, we will
- [x] change the label of GO:0044542 'plasminogen activation in another organism' to GO:0044542 symbiont-mediated activation of host plasminogen
- [x] change …
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Not issue, a suggestion:
ska map generates a VCF or alignment file corresponding to all positions of the reference genome.
Would it be interesting to have an option to restrict the mapping only …