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Hi,
I'm trying to run `topaz denoise3d` for the first time and getting the following error:
```
diogori@worker08:tomo2_L1G1$ topaz denoise3d -o topaz_unet-3d -m unet-3d tomo2_L1G1-dose_filt.mrc -…
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Subtomogram reconstruction only functions if the 'aligned folder' input parameter refers to an output folder of global alignment where only the alignmentResultsFile.txt is stored. For example:
gui_…
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ai-fas12\RMLEMHedwigQA\Projects\RTB\efischer\hansenbry-2021-0317-NIAID-QA\TEM-Tomo-2021-0317-MarchQA\Sept8Test/GZH-001
looks like: https://hedwig2qa.niaid.nih.gov/neuroglancer/UmVjb3JkOjE1OTIwNQ==
…
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### Description
Functional magnetic resonance imaging (fMRI) and magnetic resonance imaging (MRI) are techniques that allow soft tissue and blood to be represented as images. In this project we wil…
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Hi @martinschorb,
Do you know how thick (z-axis) the em overview, low-mag and high mag EM should be, respectively?
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Hi,
can i use this implementation to denoise stacks? And how would be the proper parametrizations to achieve that?
Best regards
Nikita
n1kt0 updated
2 years ago
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I get a significant amount of traffic through tomopedia to TIGRE.
I realized that CIL/CCPi codes are not there (https://tomopedia.github.io/software/).
You may want to add a PR to get this code…
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Many of the reconstruction [algorithms in the docs ](https://tomopy.readthedocs.io/en/latest/api/tomopy.recon.algorithm.html)do not have citations to papers which original proposed or explained them. …
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00:20 What is Tomography
01:48 Principle of Tomography explained with Computed Tomography (CT)
02:55 Popular Imaging Modalities
03:35 Imaging Equation
04:20 Image Reconstruction
07:14 State of t…
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**Is your feature request related to a problem? Please describe.**
I would like to propose a way to remove NAN and INF values from arrays that replaces the values with the median value of those aro…