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SBC-Utrecht
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PyTomPrivate
Development repository
GNU General Public License v2.0
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Update README.md
#178
McHaillet
closed
7 months ago
0
archive repo
#177
McHaillet
closed
7 months ago
0
Sync with public repo for 1.1
#176
McHaillet
closed
1 year ago
1
Summer cleaning 2023
#174
McHaillet
closed
1 year ago
0
switch to starfile python package for reading STAR files
#173
McHaillet
closed
7 months ago
1
Add shape to pytom volume
#172
sroet
closed
1 year ago
0
Switch to CUDA_VISIBLE_DEVICES instead of PYTOM_GPU
#171
sroet
closed
7 months ago
2
change all possible dangling 'os.popen' to 'subprocess.run' instead
#168
sroet
closed
1 year ago
1
Add all options of pytom/bin/convert.py to GUI
#167
sroet
closed
1 year ago
0
fix missing parenthesis
#166
sroet
closed
1 year ago
0
Alter input arguments to coords2PL.py and change it to a console_script with an entrypoint
#165
sroet
closed
1 year ago
4
fix tests when PYTOM_GPU=1
#164
sroet
closed
1 year ago
0
fix code style agnostic/filter.py
#163
sroet
closed
7 months ago
1
test fails if PYTOM_GPU=1 instead of 0
#162
sroet
closed
1 year ago
1
Fix ndarray types
#161
sroet
closed
1 year ago
1
coords2PL.py should have an argument for tomogram name
#160
McHaillet
closed
1 year ago
0
GUI file conversion tab needs to be updated with current convert.py script parameters
#159
McHaillet
closed
1 year ago
0
renamed sizeX sizeY and sizeZ -> size_x, size_y, size_z in all files
#158
sroet
closed
1 year ago
6
Fix code style pytom/agnostic/filter.py
#157
sroet
closed
1 year ago
1
subprocess still running warning in pipeline test
#156
McHaillet
closed
1 year ago
0
Update numpy.int to int agnostic.transform
#155
McHaillet
closed
1 year ago
0
Update README.md
#154
sroet
closed
1 year ago
0
outdated link to wiki on README
#153
McHaillet
closed
1 year ago
0
pipeline test: iteration fix and ctf correction dependent resolution
#151
McHaillet
closed
1 year ago
0
Loosen install requirement
#150
sroet
closed
1 year ago
9
Fix coding style pytom/agnostic/correlation.py
#148
sroet
closed
1 year ago
10
Fix small miscount
#146
sroet
closed
1 year ago
0
improvements for full pipeline test
#145
McHaillet
closed
1 year ago
7
Revert "changed shebang from pytom to python (#141)"
#144
sroet
closed
1 year ago
1
convert deprecated np.int to int
#142
sroet
closed
1 year ago
0
changed shebang from pytom to python
#141
sroet
closed
1 year ago
5
suggested improvement for fullpipeline test
#139
McHaillet
closed
1 year ago
1
fixed pytom_numpy import in GUI
#138
McHaillet
closed
1 year ago
0
template for matching in fullpipeline e2e-test needs update
#136
McHaillet
closed
1 year ago
1
Fix e2e tests part 3
#133
sroet
closed
1 year ago
15
3d ctf correction for subtomogram averaging
#131
McHaillet
closed
7 months ago
2
Xml2star conversion particle path bug
#130
McHaillet
closed
1 year ago
2
fix for development mode install
#129
McHaillet
closed
1 year ago
0
fix more E2E tests
#128
sroet
closed
1 year ago
4
[DO NOT MERGE]see if we can run tests on my desktop
#127
sroet
closed
1 year ago
1
conversion between star and xml does not properly handle subtomogram file and 3d ctf file
#126
McHaillet
closed
1 year ago
0
mpi4py parallelization fix
#125
McHaillet
closed
1 year ago
3
[Draft] fixes e2e tests
#123
sroet
closed
1 year ago
7
issue with openmpi parallelization for glocal
#122
McHaillet
closed
1 year ago
0
fix for e2e-test for glocal subtomogram alignment
#120
McHaillet
closed
1 year ago
0
Updated unittests for template matching
#116
McHaillet
closed
1 year ago
3
include kernels for pytom/voltools correctly in setup
#115
McHaillet
closed
1 year ago
3
fixed missing argument in call to popup_messagebox() in particle picking gui frame
#114
McHaillet
closed
1 year ago
3
bug: message needs to be added for pop-up box
#113
McHaillet
closed
1 year ago
0
Remove path source
#112
sroet
closed
1 year ago
2
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