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This Ensembl pipeline is probably one of the largest sources of incorrect IEA annotation.
One major issue that could be fixed is that the relationships appear to be ignored.
So in this case…
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### Protein
In the ID mapper: If the user provides a valid UniprotKB Accession that is not in GlyGen he currently gets an error message that this is not a valid ID. Now, based on mapping files from U…
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From 'Structural and functional insights into the mechanism of action of plant borate transporters' PMID:34112901
There are two types of 'borate' transporters:
channels:
Nodulin 26-like intrins…
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* **PTHR ID & PTN node:**
PANTHER:PTN004606439
UniProtKB:Q9P7H0
nhp2
part_of
GO:0022625 cytosolic large ribosomal subunit
ECO:0000318 IBA
GO_REF:0000033
MGI:MGI:1343877 more...
28481…
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Dear @vitkl
Thanks for developing PItools. I am first time usier of PItools and I was trying to fetch the interactions for Plasmodium from Intact and I encountered the following error:
```r
> …
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The OFFICIAL ticket for this. Related to https://github.com/pantherdb/features-bugs/issues/20 as that ticket is about formatting the input for this ticket's new code.
Currently being developed in h…
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As noted in https://github.com/NCATSTranslator/Feedback/issues/340, Babel has multiple distinct Ensembl gene identifiers for the TNF gene:
* NCBIGene:7124 (which is combined with [HGNC:11892](https:/…
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There are 2 citations missing in the `human_protein_citations_refseq.csv`. I checked the missing PMIDs and they are still valid and the `human_protein_function_refseq.csv` does contain the PMIDs. I ch…
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We know this happens sometimes (e.g. `Beta-Sitosterol` maps to both UMLS:C0106127 and PUBCHEM.COMPOUND:222284). This usually indicates that cliques have been incorrectly split, but they might also ind…
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GO constrains GO:0008023 transcription elongation factor complex to eukaryotes via its location in the nucleus
NusG in bacteria is localized to the TEFC (https://amigo.geneontology.org/amigo/ge…