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Babel
Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
MIT License
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Add additional manual conflations
#371
gaurav
opened
1 week ago
0
2024oct24 defaults UMLS IDs to proteins rather than chemical entities
#370
gaurav
opened
2 weeks ago
0
Some MONDO cliques are unexpectedly not cliqued with other identifiers
#369
gaurav
opened
2 weeks ago
2
Add support for better combination of child UMLS identifiers
#368
gaurav
opened
2 weeks ago
0
Multiple cliques for ritodrine?
#367
cbizon
opened
1 month ago
1
Set up a namespace on Sterling specifically for Babel
#366
gaurav
opened
1 month ago
0
Babel 1.9
#365
gaurav
opened
1 month ago
0
MESH:C053590 (quinquefolan B) is combined with CHEBI:16335 (adenosine)
#364
gaurav
opened
1 month ago
1
Check duplicate prefixes
#363
gaurav
opened
1 month ago
0
Improve DrugChemical conflation leader
#362
gaurav
opened
1 month ago
0
Incorporate UMLS_UniProtKB mappings
#361
gaurav
opened
1 month ago
0
Added some additional manual concords
#360
gaurav
closed
2 weeks ago
1
Improve prefix checking
#359
gaurav
opened
1 month ago
3
ICD-11 Mappings
#357
beasleyjonm
opened
1 month ago
2
RXCUI:1736859 "insulin glargine 100 UNT/ML [Basaglar]" not combined with other insulins
#356
gaurav
closed
2 weeks ago
0
Number of GeneProtein conflations and fell in 2024oct1
#355
gaurav
opened
1 month ago
1
Issues with NameResolver identifying Simoctocog Alfa
#354
marcello-deluca
opened
1 month ago
7
Improve Babel CPU and memory configuration on Sterling
#353
gaurav
opened
1 month ago
0
Improve PubMed download
#352
gaurav
opened
1 month ago
0
Babel 1.8 (Translator Hammerhead)
#351
gaurav
closed
2 weeks ago
0
Missing gene connection with UMLS because we don't include NCIT mappings
#350
gaurav
opened
1 month ago
1
Add taxon information to proteins
#349
gaurav
closed
2 weeks ago
0
Check Drug.txt to ensure that we don't have small molecules in there
#348
gaurav
opened
2 months ago
0
Adds a basic citation to Babel
#347
gaurav
closed
2 months ago
0
Should bivalirudin and bivalirudin trifluoroacetate be cliqued together?
#346
gaurav
opened
2 months ago
0
NCBIGenes missing primary label
#345
gaurav
opened
2 months ago
0
Brand name "Estrostep Fe" not tied to the underlying PubChem
#344
gaurav
opened
2 months ago
0
Xylitol - split clique
#343
gaurav
opened
2 months ago
0
Added a check for duplicate CURIEs
#342
gaurav
closed
2 weeks ago
0
DrugChemical conflation defaults to the numerically smallest identifier, which doesn't always work
#341
gaurav
opened
2 months ago
0
Add Babel Guppy release information
#340
gaurav
closed
2 weeks ago
0
Missing some human proteins, even though we have the genes for them
#339
gaurav
opened
2 months ago
0
Figure out how to use the identically-labeled-clique information to make things better
#338
gaurav
opened
2 months ago
1
Add a manual concord for DrugChemicalConflation
#337
gaurav
closed
2 weeks ago
0
Babel 1.7 (Translator Guppy)
#336
gaurav
closed
1 month ago
0
Add DrugBank labels
#335
gaurav
closed
1 month ago
1
Implement a species conflation
#334
gaurav
opened
3 months ago
0
some curies that probably should be linked
#333
gglusman
closed
2 weeks ago
1
DrugBank ID being dropped between untyped compendium and final ChemicalEntity compendium
#332
gaurav
closed
2 months ago
2
Watch out for conflation issues with labeling
#331
gaurav
opened
3 months ago
0
Reduce DrugChemical for load into SAPBERT
#330
gaurav
closed
2 weeks ago
0
Cell wikidata
#329
cbizon
closed
3 months ago
0
Adding SSSOM export
#328
gaurav
opened
3 months ago
0
How do we deal with the different types of insulin?
#327
gaurav
opened
3 months ago
4
Improved and more transparent cliquing
#326
gaurav
opened
3 months ago
0
Skip unresolvable DrugChemical conflation identifiers
#325
gaurav
closed
3 months ago
0
"Organism" class in LitCoin covers many types of concepts, some of which we don't have
#324
gaurav
opened
3 months ago
0
Babel technical debt
#323
gaurav
opened
3 months ago
0
Improve choice of the best preferred identifier for conflated chemicals
#322
gaurav
opened
3 months ago
1
Prefix OMIM should be renamed to MIM
#321
gaurav
opened
3 months ago
0
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