search

TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
MIT License
8 stars 2 forks source link

EFO:0009458 being typed as a PhenotypicFeature even though it is a measurement #269

Open gaurav opened 2 months ago

gaurav commented 2 months ago

EFO:0009458 "alcohol use disorder measurement" is currently typed as a biolink:PhenotypicFeature, when it is clearly some kind of measurement -- but maybe we combine measurements with the phenotypes they measure? Not sure what the right answer is, but I would be surprised to see this show up as a phenotypic feature, I think.

gaurav commented 2 months ago

If we have a better Biolink type to assign measurements to, we should be able to change that in a single line:

https://github.com/TranslatorSRI/Babel/blob/0c3f3aed1bb1647f1ca101ba905dc241797fdfc9/src/createcompendia/diseasephenotype.py#L34