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TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
MIT License
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Remove special handling of Polypeptide and ChemicalEntity prefixes #263

Closed gaurav closed 1 month ago

gaurav commented 2 months ago

We have a couple of special cases for handling prefixes for biolink:Polypeptide and biolink:ChemicalEntity:

https://github.com/TranslatorSRI/Babel/blob/78bf0f7f039f897dabb73768d21c010c87a85757/src/node.py#L312-L316

However, both biolink:Polypeptide and biolink:ChemicalEntity have reasonable looking prefixes now.

@cbizon Should we remove these special cases?

cbizon commented 2 months ago

Yes, I think we should