Levothyroxine not being properly conflated via drug-chemical conflation - Githubissues

TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.

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Levothyroxine not being properly conflated via drug-chemical conflation #262

Open gaurav opened 2 months ago

gaurav commented 2 months ago

Something strange is going on with Levothyroxine:

NameRes Exp returns a bunch of chemicals containing levothyroxine: https://name-resolution-sri-dev.apps.renci.org/lookup?string=levothyroxine&autocomplete=true&offset=0&limit=10
- Turning off autocomplete returns UMLS:C0040165 "levothyroxine" with a whole bunch of synonyms, but with clique_: https://name-resolution-sri-dev.apps.renci.org/lookup?string=levothyroxine&autocomplete=false&offset=0&limit=10
- This is in fact correct: there are no other labels for this chemical in NodeNorm: https://nodenormalization-dev.apps.renci.org/1.4/get_normalized_nodes?curie=UMLS%3AC0040165&conflate=true&drug_chemical_conflate=true&description=false

So are all these synonyms coming from UMLS? Do we not have a proper Levothyroxine clique? Is drug-chemical conflation not working here?