search

TranslatorSRI / Babel

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.
MIT License
9 stars 2 forks source link

EFO:0010702 should be combined with UMLS:C4324621 via MedDRA:10079385 #270

Open gaurav opened 5 months ago

gaurav commented 5 months ago

According to http://www.ebi.ac.uk/efo/EFO_0010702, EFO:0010702 has a dbxref to MedDRA:10079385, which NodeNorm combines with UMLS:C4324621. If we can pick up those connections from either EFO or another source, we should be able to collapse our opioid use disorders cliques a bit more (#265).

gaurav commented 5 months ago

This is because we only pick up EFO exactMatches, not dbxrefs:

https://github.com/TranslatorSRI/Babel/blob/0c3f3aed1bb1647f1ca101ba905dc241797fdfc9/src/datahandlers/efo.py#L85-L89

Given that dbxrefs aren't exact matches, we probably shouldn't expand this without much thought.